View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5523-Insertion-6 (Length: 510)

Name: NF5523-Insertion-6
Description: NF5523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5523-Insertion-6
NF5523-Insertion-6
[»] chr2 (1 HSPs)
chr2 (11-510)||(38734278-38734778)


Alignment Details
Target: chr2 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 11 - 510
Target Start/End: Complemental strand, 38734778 - 38734278
Alignment:
Q  11 agggcagtgatttaacttccagatgatattgtgaa-ggggggtaggatagtccggatgttnnnnnnntcagttgccagtctttgggactattagtagcaa 109  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||       |||||||||||||||||||||||||||||||||    
T  38734778 agggcagtgatttaacttccagatgatattgtgaaaggggggtagaatagtccggatgttaaaaaaatcagttgccagtctttgggactattagtagcaa 38734679  T
Q  110 gcaacttagaattaatttgtattataaagtaatgcacaatactgaacattttggtgttttctttattttctgaagttaacaccttcagtgaaaggcgcgc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38734678 gcaacttagaattaatttgtattataaagtaatgcacaatactgaacattttggtgttttctttattttctgaagttaacaccttcagtgaaaggcgcgc 38734579  T
Q  210 tttttggcacctatagctaccagtgctatcaaattgcagccatggtggattgcaatgccagttcttttgcaaaccactatggcaaatttgtgaaggatgg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38734578 tttttggcacctatagctaccagtgctatcaaattgcagccatggtggattgcaatgccagttcttttgcaaaccactatggcaaatttgtgaaggatgg 38734479  T
Q  310 tgttttatggtagcttaaaatagtgaacattttgccttccacgatcaatatcactggtaaccacaaggaacggttaccaaccatgcacaaacattgaaag 409  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38734478 tgttttatggtagcttaaaatagtgaacattttgccttccacaaccaatatcactggtaaccacaaggaacggttaccaaccatgcacaaacattgaaag 38734379  T
Q  410 aatgcagagaaaactcaagcaatttaactgcatgtttggattggtggtggcagaatcacgatgagacactgcgatttaggcgaaaactgcatattaaagc 509  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38734378 aatgcagagaaaactcaaacaatttaactgcatgtttggattggtggtggcagaatcacgatgagacactgcgatttaggcgaaaactgcatattaaagc 38734279  T
Q  510 t 510  Q
    |    
T  38734278 t 38734278  T

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