View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5523-Insertion-8 (Length: 302)

Name: NF5523-Insertion-8
Description: NF5523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5523-Insertion-8
NF5523-Insertion-8
[»] chr1 (16 HSPs)
chr1 (8-302)||(13094642-13094936)
chr1 (8-302)||(13130071-13130365)
chr1 (8-299)||(13161764-13162055)
chr1 (8-215)||(13007443-13007650)
chr1 (8-259)||(13101243-13101494)
chr1 (8-259)||(19727396-19727647)
chr1 (10-216)||(13069917-13070123)
chr1 (73-218)||(30367847-30367992)
chr1 (58-173)||(13244302-13244417)
chr1 (10-242)||(13204704-13204936)
chr1 (58-173)||(13271882-13271997)
chr1 (78-260)||(13214132-13214314)
chr1 (73-218)||(13064952-13065097)
chr1 (54-170)||(19278952-19279068)
chr1 (74-157)||(12963708-12963791)
chr1 (68-178)||(13080641-13080751)
[»] chr6 (1 HSPs)
chr6 (76-173)||(31396459-31396557)


Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 8 - 302
Target Start/End: Original strand, 13094642 - 13094936
Alignment:
Q  8 ggaggtatactagcttatcaagatccacatccctcaaagtaatccgattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  13094642 ggaggtatactagcttatcaagatccacatccctcaaagtaatccgataatcctctcgtgttaaccaattatctctgatctcttgaatgattttttcttc 13094741  T
Q  108 cacaataggataagttgaaagaagccagaaaaaccaactgagagctgaaccaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaaga 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13094742 cacaataggataagttgaaagaagccagaaaaaccaactgagagctgaactaattgtaccatttccggcaaatatcatagtaaatgcagtgtctctaaga 13094841  T
Q  208 tacttctcactgatttctccctttccatgtccttcgttctttagggcttttaccatgcctaaaaagcattggtgcatttcttcattgctgcactt 302  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||    
T  13094842 tacttctcactgatttctccctttccatgtccttcattctttagggcttttaccatgcctaaaaaacattggtacatttcttcatagctgcactt 13094936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 302
Target Start/End: Original strand, 13130071 - 13130365
Alignment:
Q  8 ggaggtatactagcttatcaagatccacatccctcaaagtaatccgattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttc 107  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13130071 ggaggtatactagcttatcaagatccacatgcctcaaagtaatccgattaccctcttgtgttaaccaattatctttgatctcttgaatgattttttcttc 13130170  T
Q  108 cacaataggataagttgaaagaagccagaaaaaccaactgagagctgaaccaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaaga 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| | |||||||| |||||| |||||||||    
T  13130171 cacaataggataagttgaaagaagccagaaaaaccaactgagagctgaactaattgaaccatttccggcaaaaaacatagtaaatgcagtatctctaaga 13130270  T
Q  208 tacttctcactgatttctccctttccatgtccttcgttctttagggcttttaccatgcctaaaaagcattggtgcatttcttcattgctgcactt 302  Q
    ||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||    
T  13130271 tacttctcactgatttcaccctttccatatccttcattctttagggcttttaccatgcctaaaaaacattggtccatttcttcatcgctgcactt 13130365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 299
Target Start/End: Original strand, 13161764 - 13162055
Alignment:
Q  8 ggaggtatactagcttatcaagatccacatccctcaaagtaatccgattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttc 107  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13161764 ggaggtatactagcttatcaagaaccacatccctcaaaataatccgattatcctcttgtgttagccaattatctttgatctcttgaatgattttttcttc 13161863  T
Q  108 cacaataggataagttgaaagaagccagaaaaaccaactgagagctgaaccaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaaga 207  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||| | |||||| |||||||| |||||||||    
T  13161864 cacaataggataagttgaaaggagccagaaaaaccaactgagagctgaactaattgaaccatttccggcaaacaccatagtgagtgcagtatctctaaga 13161963  T
Q  208 tacttctcactgatttctccctttccatgtccttcgttctttagggcttttaccatgcctaaaaagcattggtgcatttcttcattgctgca 299  Q
    ||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||    
T  13161964 tacttctcactgatttccccctttccatatccttctttctttagggcttttaccatgcctaaaaaacattggtccatttcttcgttgctgca 13162055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 13007443 - 13007650
Alignment:
Q  8 ggaggtatactagcttatcaagatccacatccctcaaagtaatccgattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttc 107  Q
    ||||||| ||||||||||||||||||||||| ||||||| | || |||| |||||||||||   ||| ||||||||||| |||||||| |||||  ||||    
T  13007443 ggaggtacactagcttatcaagatccacatctctcaaaggagtctgattctcctcttgtgtgggccagttatctttgatttcttgaataattttggcttc 13007542  T
Q  108 cacaataggataagttgaaagaagccagaaaaaccaactgagagctgaaccaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaaga 207  Q
    ||||||||||| |||||||| |||||||||||||||||||||| |||||| |||||| |||||||| || || |  | ||| ||  || |||||||||||    
T  13007543 cacaataggatgagttgaaacaagccagaaaaaccaactgagacctgaactaattgtgccatttcctgctaaaaagagagtgaggacattgtctctaaga 13007642  T
Q  208 tacttctc 215  Q
    ||||||||    
T  13007643 tacttctc 13007650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 13101243 - 13101494
Alignment:
Q  8 ggaggtatactagcttatcaagatccacatccctcaaagtaatccgattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttc 107  Q
    ||||||| |||||||||||||||| | |||| ||| ||| |||| |||| |||||||||||    || ||||||||||| |||||||| |||||  ||||    
T  13101243 ggaggtacactagcttatcaagatactcatctctcgaaggaatctgattctcctcttgtgtaggacagttatctttgatttcttgaattattttggcttc 13101342  T
Q  108 cacaataggataagttgaaagaagccagaaaaaccaactgagagctgaaccaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaaga 207  Q
    ||||||||||| ||| |||| ||||||||||||||||||||||||||||| || ||  |||||||| || || |  | ||| | | || |||||||||||    
T  13101343 cacaataggatgagtggaaacaagccagaaaaaccaactgagagctgaactaactgggccatttcctgctaaaaagagagtgattacattgtctctaaga 13101442  T
Q  208 tacttctcactgatttctccctttccatgtccttcgttctttagggctttta 259  Q
    |||||||||   ||||| |||||||||  |||||| ||| |||| |||||||    
T  13101443 tacttctcatccatttccccctttccagatccttccttcgttagtgctttta 13101494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 19727396 - 19727647
Alignment:
Q  8 ggaggtatactagcttatcaagatccacatccctcaaagtaatccgattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttc 107  Q
    ||||||| ||||||||||||||||||||||| ||||||| | || | || |||||||||||   ||| ||||||||||| |||||||| |||||  ||||    
T  19727396 ggaggtacactagcttatcaagatccacatctctcaaaggagtctggttctcctcttgtgtgggccagttatctttgatttcttgaataattttggcttc 19727495  T
Q  108 cacaataggataagttgaaagaagccagaaaaaccaactgagagctgaaccaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaaga 207  Q
     |||||||||| ||| |||| |||||| ||||||||||||||| ||| || || ||  |||||||| || || |  | ||| |||  | |||||||||||    
T  19727496 gacaataggatgagtcgaaacaagccaaaaaaaccaactgagacctgtactaactgggccatttcctgctaaaaagagagtgagtaaattgtctctaaga 19727595  T
Q  208 tacttctcactgatttctccctttccatgtccttcgttctttagggctttta 259  Q
    ||||||||| | ||||| |||||||||  |||||| ||| |||| |||||||    
T  19727596 tacttctcattcatttccccctttccagatccttccttcattagtgctttta 19727647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 216
Target Start/End: Complemental strand, 13070123 - 13069917
Alignment:
Q  10 aggtatactagcttatcaagatccacatccctcaaagtaatccgattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttcca 109  Q
    ||||| ||||| ||||||||||||||||| ||| ||| | || |||| |||||||||||   ||| |||||||| || |||||||| |||||  ||||||    
T  13070123 aggtacactagattatcaagatccacatctctccaaggagtctgattctcctcttgtgtgggccagttatcttttatttcttgaataattttggcttcca 13070024  T
Q  110 caataggataagttgaaagaagccagaaaaaccaactgagagctgaaccaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaagata 209  Q
    ||||||||| |||||||| |||||||||||||||||||||| |||||  || ||| |||||||| || || |  | ||  |||||| |||||||||||||    
T  13070023 caataggatgagttgaaacaagccagaaaaaccaactgagacctgaagtaactgtgccatttcctgctaaaaagagagagagtgcattgtctctaagata 13069924  T
Q  210 cttctca 216  Q
    |||||||    
T  13069923 cttctca 13069917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 218
Target Start/End: Complemental strand, 30367992 - 30367847
Alignment:
Q  73 caattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagctgaaccaattgtaccatttc 172  Q
    ||||||||||||||||||||||| |||||  ||||||||||||||| |||||||| ||||||||||||||||||||||  ||||| || ||| ||||| |    
T  30367992 caattatctttgatctcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacttgaactaagtgtgccattac 30367893  T
Q  173 cggcaaatatcatagtaagtgcagtgtctctaagatacttctcact 218  Q
    | || || |  | ||  |||||| ||||||||||||||||||||||    
T  30367892 ctgctaacaaaagagagagtgcattgtctctaagatacttctcact 30367847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 58 - 173
Target Start/End: Complemental strand, 13244417 - 13244302
Alignment:
Q  58 tcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagctgaac 157  Q
    |||||||||||||  ||||||||||||||||||||||| |||||  ||||| ||||||||| |||||||| |||||| || |||||||| ||| ||||||    
T  13244417 tcctcttgtgttagacaattatctttgatctcttgaataattttcgcttccccaataggatgagttgaaacaagccaaaagaaccaacttagacctgaac 13244318  T
Q  158 caattgtaccatttcc 173  Q
     |||||| ||||||||    
T  13244317 taattgttccatttcc 13244302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 10 - 242
Target Start/End: Original strand, 13204704 - 13204936
Alignment:
Q  10 aggtatactagcttatcaagatccacatccctcaaagtaatccgattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttcca 109  Q
    ||||| |||||||||||||||| | |||| ||| ||| |||| |||| |||||||||||    || ||||||||||| |||||||| |||||  ||||||    
T  13204704 aggtacactagcttatcaagatactcatctctcgaaggaatctgattctcctcttgtgtaggacagttatctttgatttcttgaattattttggcttcca 13204803  T
Q  110 caataggataagttgaaagaagccagaaaaaccaactgagagctgaaccaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaagata 209  Q
    ||||||||| ||| |||| |||||| ||||||||||| ||| |||||| |  || |||| |||| || || |  | ||  |||| |  |||||||||| |    
T  13204804 caataggatgagtggaaacaagccaaaaaaaccaacttagacctgaactagctggaccacttcctgctaagaagagagagagtgtatcgtctctaagaaa 13204903  T
Q  210 cttctcactgatttctccctttccatgtccttc 242  Q
    |||| |||| |||||| ||||||||| ||||||    
T  13204904 cttcccactcatttcttcctttccatatccttc 13204936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 58 - 173
Target Start/End: Original strand, 13271882 - 13271997
Alignment:
Q  58 tcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagctgaac 157  Q
    |||||||||||||  |||| |||||||||||||||||| | |||| |||||||| |||||| |||||||| |||||| || |||||||| ||| ||||||    
T  13271882 tcctcttgtgttagacaatgatctttgatctcttgaataagttttgcttccacattaggatgagttgaaacaagccaaaagaaccaacttagacctgaac 13271981  T
Q  158 caattgtaccatttcc 173  Q
     || ||| ||||||||    
T  13271982 taactgttccatttcc 13271997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 78 - 260
Target Start/End: Original strand, 13214132 - 13214314
Alignment:
Q  78 atctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagctgaaccaattgtaccatttccggca 177  Q
    |||||| || |||||||| |||||  ||||||||||| ||| |||||||| |||||||||||||||| ||||| |||||| || ||  |||||||| ||     
T  13214132 atcttttatttcttgaataattttagcttccacaataagatgagttgaaacaagccagaaaaaccaaatgagacctgaacgaactgggccatttcctgct 13214231  T
Q  178 aatatcatagtaagtgcagtgtctctaagatacttctcactgatttctccctttccatgtccttcgttctttagggcttttac 260  Q
    || |  | ||| |  ||| ||||||||||||||||||||   ||||| |||||||||  |||||| ||| |||| ||||||||    
T  13214232 aaaaagagagtgatcgcattgtctctaagatacttctcatccatttccccctttccaaatccttccttcattagtgcttttac 13214314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 73 - 218
Target Start/End: Complemental strand, 13065097 - 13064952
Alignment:
Q  73 caattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagctgaaccaattgtaccatttc 172  Q
    ||||||||||| ||||||||||| || ||  ||||||||| ||||| |  ||||| |||||| || |||||||||||| |||||| || ||| || ||||    
T  13065097 caattatctttcatctcttgaataatcttggcttccacaacaggatgacatgaaacaagccaaaagaaccaactgagacctgaactaactgtgccgtttc 13064998  T
Q  173 cggcaaatatcatagtaagtgcagtgtctctaagatacttctcact 218  Q
    | || || |  | | | | |||||||||||||||||||||||||||    
T  13064997 ccgctaacaatagattgactgcagtgtctctaagatacttctcact 13064952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 170
Target Start/End: Complemental strand, 19279068 - 19278952
Alignment:
Q  54 attatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagct 153  Q
    ||||||||||| |||||| || ||| | |||||||||||||| |||||| |||| |||||||||| |||||| |  ||||| || |||||| ||||| |     
T  19279068 attatcctcttttgttaaacagttaaccttgatctcttgaataatttttgcttcgacaataggatgagttgatacgagccaaaagaaccaattgagaccc 19278969  T
Q  154 gaaccaattgtaccatt 170  Q
    |||| |||||| |||||    
T  19278968 gaactaattgttccatt 19278952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 12963791 - 12963708
Alignment:
Q  74 aattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagctgaac 157  Q
    |||||||||| ||||||||||| |||||   |||||||||||||| |||||||| |||||| || |||||||| ||| ||||||    
T  12963791 aattatctttaatctcttgaataattttagtttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaac 12963708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 178
Target Start/End: Complemental strand, 13080751 - 13080641
Alignment:
Q  68 ttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagctgaaccaattgtacc 167  Q
    |||| ||||||||||||||||||||||| |||||  | || ||  ||||||  |||||||  ||||| ||||||||| ||||| ||| || |||||| ||    
T  13080751 ttaaacaattatctttgatctcttgaataattttaccatctaccctaggatgcgttgaaaccagccaaaaaaaccaagtgagacctgtactaattgttcc 13080652  T
Q  168 atttccggcaa 178  Q
    |||||| ||||    
T  13080651 atttcctgcaa 13080641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 173
Target Start/End: Complemental strand, 31396557 - 31396459
Alignment:
Q  76 ttatctttgatctcttgaatgattttttcttccacaataggataagttgaaag-aagccagaaaaaccaactgagagctgaaccaattgtaccatttcc 173  Q
    |||||||  ||||||||||| |||||  |||||||| |||||| ||||||||  ||||||||||||||||| ||||  ||||| |||||| ||||||||    
T  31396557 ttatcttgaatctcttgaataattttggcttccacattaggatgagttgaaaacaagccagaaaaaccaaccgagacttgaactaattgtgccatttcc 31396459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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