View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5523-Insertion-9 (Length: 373)
Name: NF5523-Insertion-9
Description: NF5523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5523-Insertion-9 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 38 - 373
Target Start/End: Original strand, 34264380 - 34264715
Alignment:
| Q |
38 |
agaaattggtttctcatttattttgacactaatttagccaaacatcgcagtatacggctcttcattttaggaaactatggttgccaacaaaaatgtgatt |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34264380 |
agaaattggtttctcatttattttgacactaatttagccaaacatcgcaggatacggctcttcattttaggaaactatggttgccaacaaaaatgtgatt |
34264479 |
T |
|
| Q |
138 |
ttattaaacgaaatacagttatgagtaagacaataattttgtgtggtcaccttgccagcagagatttttccaatttccatgactattcattcaactaatt |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34264480 |
ttattaaacgaaatacagttatgagtaagacaataattttgtgtggtcaccttgccagcagagatttttccaatttccatgactattcattcaactaatt |
34264579 |
T |
|
| Q |
238 |
cactatctgacattttcattccaaaacaagtagcattggttaatttgctatttcccccggcccaaactatacacgtgatgcaagaacatttcattttcca |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34264580 |
cactatctgacattttcattccaaaacaagtagcattggttaatttgctatttcccccggcccaaactatacacgtgatgcaagaacatttcattttcca |
34264679 |
T |
|
| Q |
338 |
ccaaattaatagtgctatttgttgtgggcatgtggc |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
34264680 |
ccaaattaatagtgctatttgttgtgggcatgtggc |
34264715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University