View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5523_high_19 (Length: 210)

Name: NF5523_high_19
Description: NF5523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5523_high_19
NF5523_high_19
[»] chr4 (23 HSPs)
chr4 (1-128)||(26163487-26163614)
chr4 (127-210)||(26163637-26163720)
chr4 (127-210)||(26162791-26162874)
chr4 (1-128)||(26162782-26162909)
chr4 (127-210)||(26162932-26163015)
chr4 (1-119)||(26163628-26163746)
chr4 (138-210)||(26163084-26163156)
chr4 (1-120)||(26162923-26163042)
chr4 (127-210)||(26163214-26163297)
chr4 (130-210)||(26163499-26163579)
chr4 (128-200)||(26180718-26180790)
chr4 (1-98)||(26163769-26163866)
chr4 (128-200)||(26180604-26180676)
chr4 (1-120)||(26163064-26163183)
chr4 (1-128)||(26163346-26163473)
chr4 (130-210)||(26163358-26163438)
chr4 (128-200)||(26180490-26180562)
chr4 (1-128)||(26163205-26163332)
chr4 (130-210)||(26192753-26192833)
chr4 (130-210)||(26192840-26192920)
chr4 (132-210)||(26176534-26176612)
chr4 (127-210)||(26163778-26163861)
chr4 (130-210)||(26192927-26193007)


Alignment Details
Target: chr4 (Bit Score: 104; Significance: 5e-52; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 26163487 - 26163614
Alignment:
Q  1 ttatgtaaggtccattggattcatgggtacgggtcttgtactcggcagtgtaacctgggttcctggcttcgtgtttgaaatattgagttatgtaaggtgc 100  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26163487 ttatgtaaggtccattggattcatgggtatgggtcttgtacccggtagtgtaatctgggttcctggcttcgtgtttgaaatattgagttatgtaaggtgc 26163586  T
Q  101 attggaatccgattgtttggattcatgt 128  Q
    ||||||||||| |||||| |||||||||    
T  26163587 attggaatccggttgtttagattcatgt 26163614  T

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Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 26163637 - 26163720
Alignment:
Q  127 gttcattggattcatgggtatgggtcttgtacccggtagtgtaacctggattcttggcttcatgtttaccatattgagttatgt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26163637 gttcattggattcatgggtatgggtcttgtacccggtagtgtaacctggattcttggcttcatgtttactatattgagttatgt 26163720  T

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Target: chr4; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 26162791 - 26162874
Alignment:
Q  127 gttcattggattcatgggtatgggtcttgtacccggtagtgtaacctggattcttggcttcatgtttaccatattgagttatgt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  26162791 gttcattggattcatgggtatgggtcttgtacccggtagtgtaatctgggttcttggcttcatgtttaccatattgagttatgt 26162874  T

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Target: chr4; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 26162782 - 26162909
Alignment:
Q  1 ttatgtaaggtccattggattcatgggtacgggtcttgtactcggcagtgtaacctgggttcctggcttcgtgtttgaaatattgagttatgtaaggtgc 100  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||| |||||||| ||||||| |||||   ||||||||||||||||||| |    
T  26162782 ttatgtaaggttcattggattcatgggtatgggtcttgtacccggtagtgtaatctgggttcttggcttcatgtttaccatattgagttatgtaaggtcc 26162881  T
Q  101 attggaatccgattgtttggattcatgt 128  Q
    ||||||||||| |||||||  |||||||    
T  26162882 attggaatccggttgtttgacttcatgt 26162909  T

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Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 26162932 - 26163015
Alignment:
Q  127 gttcattggattcatgggtatgggtcttgtacccggtagtgtaacctggattcttggcttcatgtttaccatattgagttatgt 210  Q
    ||||||||||||||||||||||||| |||||||| ||||||||| || | ||||||||||||||||||||||||||||||||||    
T  26162932 gttcattggattcatgggtatgggttttgtacccagtagtgtaatcttggttcttggcttcatgtttaccatattgagttatgt 26163015  T

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Target: chr4; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 26163628 - 26163746
Alignment:
Q  1 ttatgtaaggtccattggattcatgggtacgggtcttgtactcggcagtgtaacctgggttcctggcttcgtgtttgaaatattgagttatgtaaggtgc 100  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||| |||||||||||| ||| ||||||| |||||   ||||||||||||||||||| |    
T  26163628 ttatgtaaggttcattggattcatgggtatgggtcttgtacccggtagtgtaacctggattcttggcttcatgtttactatattgagttatgtaaggtcc 26163727  T
Q  101 attggaatccgattgtttg 119  Q
    |||| |||| | |||||||    
T  26163728 attgaaatctggttgtttg 26163746  T

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Target: chr4; HSP #7
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 26163084 - 26163156
Alignment:
Q  138 tcatgggtatgggtcttgtacccggtagtgtaacctggattcttggcttcatgtttaccatattgagttatgt 210  Q
    |||||||||||||||||||||| |||||||||| |||| ||||||||||||||| ||||||||||||||||||    
T  26163084 tcatgggtatgggtcttgtaccgggtagtgtaatctgggttcttggcttcatgtgtaccatattgagttatgt 26163156  T

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Target: chr4; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 26162923 - 26163042
Alignment:
Q  1 ttatgtaaggtccattggattcatgggtacgggtcttgtactcggcagtgtaacctgggttcctggcttcgtgtttgaaatattgagttatgtaaggtgc 100  Q
    ||||||||||| ||||||||||||||||| |||| |||||| | | ||||||| || ||||| ||||||| |||||   ||||||||||||||||||| |    
T  26162923 ttatgtaaggttcattggattcatgggtatgggttttgtacccagtagtgtaatcttggttcttggcttcatgtttaccatattgagttatgtaaggtcc 26163022  T
Q  101 attggaatccgattgtttgg 120  Q
    |||||| || ||||||||||    
T  26163023 attggattctgattgtttgg 26163042  T

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Target: chr4; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 26163214 - 26163297
Alignment:
Q  127 gttcattggattcatgggtatgggtcttgtacccggtagtgtaacctggattcttggcttcatgtttaccatattgagttatgt 210  Q
    ||||||| |||||||| ||||| || |||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||    
T  26163214 gttcattagattcatgagtatgagtattgtacccggtagtgtaatctgggttcttgtcttcatgtttaccatattgagttatgt 26163297  T

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Target: chr4; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 26163499 - 26163579
Alignment:
Q  130 cattggattcatgggtatgggtcttgtacccggtagtgtaacctggattcttggcttcatgtttaccatattgagttatgt 210  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||| |||||   ||||||||||||||    
T  26163499 cattggattcatgggtatgggtcttgtacccggtagtgtaatctgggttcctggcttcgtgtttgaaatattgagttatgt 26163579  T

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Target: chr4; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 26180718 - 26180790
Alignment:
Q  128 ttcattggattcatgggtatgggtcttgtacccggtagtgtaacctggattcttggcttcatgtttaccatat 200  Q
    |||||| |||||||||||||||||||||||||| ||||||||| | || ||||||||||||||||||||||||    
T  26180718 ttcattagattcatgggtatgggtcttgtaccctgtagtgtaatccgggttcttggcttcatgtttaccatat 26180790  T

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Target: chr4; HSP #12
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 26163769 - 26163866
Alignment:
Q  1 ttatgtaaggtccattggattcatgggtacgggtcttgtactcggcagtgtaacctgggttcctggcttcgtgtttgaaatattgagttatgtaaggt 98  Q
    ||||||||||| |||||||||||||| ||    |||||||| ||| ||||||| || ||||| ||||||||||||||||||||||||| |||||||||    
T  26163769 ttatgtaaggttcattggattcatggctataaatcttgtacccggtagtgtaatcttggttcttggcttcgtgtttgaaatattgagtcatgtaaggt 26163866  T

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Target: chr4; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 26180604 - 26180676
Alignment:
Q  128 ttcattggattcatgggtatgggtcttgtacccggtagtgtaacctggattcttggcttcatgtttaccatat 200  Q
    |||||| |||||||||||||||||||||||||| ||||||||| | |  ||||||||||||||||||||||||    
T  26180604 ttcattagattcatgggtatgggtcttgtaccctgtagtgtaatccgcgttcttggcttcatgtttaccatat 26180676  T

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Target: chr4; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 26163064 - 26163183
Alignment:
Q  1 ttatgtaaggtccattggattcatgggtacgggtcttgtactcggcagtgtaacctgggttcctggcttcgtgtttgaaatattgagttatgtaaggtgc 100  Q
    ||||||||||||| ||||  ||||||||| |||||||||||  || ||||||| |||||||| ||||||| ||| |   |||||||||||||||||||      
T  26163064 ttatgtaaggtcctttggcctcatgggtatgggtcttgtaccgggtagtgtaatctgggttcttggcttcatgtgtaccatattgagttatgtaaggtct 26163163  T
Q  101 attggaatccgattgtttgg 120  Q
    |||||||| || ||||||||    
T  26163164 attggaattcggttgtttgg 26163183  T

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Target: chr4; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 26163346 - 26163473
Alignment:
Q  1 ttatgtaaggtccattggattcatgggtacgggtcttgtactcggcagtgtaacctgggttcctggcttcgtgtttgaaatattgagttatgtaaggtgc 100  Q
    ||||||||||||||||||||||||| |||   || |||||| ||| ||||||| ||| || | ||||| | |||||   ||||||||||||||||||| |    
T  26163346 ttatgtaaggtccattggattcatgagtataagttttgtacccggtagtgtaatctgcgtccttggctacatgtttaccatattgagttatgtaaggtcc 26163445  T
Q  101 attggaatccgattgtttggattcatgt 128  Q
    ||||||||| | |||||||| |||||||    
T  26163446 attggaatctggttgtttggcttcatgt 26163473  T

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Target: chr4; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 26163358 - 26163438
Alignment:
Q  130 cattggattcatgggtatgggtcttgtacccggtagtgtaacctggattcttggcttcatgtttaccatattgagttatgt 210  Q
    ||||||||||||| ||||  || |||||||||||||||||| |||  | ||||||| ||||||||||||||||||||||||    
T  26163358 cattggattcatgagtataagttttgtacccggtagtgtaatctgcgtccttggctacatgtttaccatattgagttatgt 26163438  T

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Target: chr4; HSP #17
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 26180490 - 26180562
Alignment:
Q  128 ttcattggattcatgggtatgggtcttgtacccggtagtgtaacctggattcttggcttcatgtttaccatat 200  Q
    ||||| ||||||| ||||||||||||||||||| ||| ||||| | || ||||||||||||||||||||||||    
T  26180490 ttcatgggattcaggggtatgggtcttgtaccctgtaatgtaatccgggttcttggcttcatgtttaccatat 26180562  T

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Target: chr4; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 26163205 - 26163332
Alignment:
Q  1 ttatgtaaggtccattggattcatgggtacgggtcttgtactcggcagtgtaacctgggttcctggcttcgtgtttgaaatattgagttatgtaaggtgc 100  Q
    |||||||| || |||| |||||||| ||| | || |||||| ||| ||||||| |||||||| || |||| |||||   ||||||||||||||||||| |    
T  26163205 ttatgtaacgttcattagattcatgagtatgagtattgtacccggtagtgtaatctgggttcttgtcttcatgtttaccatattgagttatgtaaggtcc 26163304  T
Q  101 attggaatccgattgtttggattcatgt 128  Q
    |||||||||   |||||||| |||||||    
T  26163305 attggaatctagttgtttggtttcatgt 26163332  T

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Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 26192753 - 26192833
Alignment:
Q  130 cattggattcatgggtatgggtcttgtacccggtagtgtaacctggattcttggcttcatgtttaccatattgagttatgt 210  Q
    |||||||||||||| |||||||| | ||||||||| |||||  | | | ||||| ||||||||||||||||||||||||||    
T  26192753 cattggattcatggttatgggtcatatacccggtaatgtaatttagttgcttggtttcatgtttaccatattgagttatgt 26192833  T

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Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 26192840 - 26192920
Alignment:
Q  130 cattggattcatgggtatgggtcttgtacccggtagtgtaacctggattcttggcttcatgtttaccatattgagttatgt 210  Q
    |||||||||||||| |||||||| | ||||||||| |||||  | | | ||||| ||||||||||||||||||||||||||    
T  26192840 cattggattcatggttatgggtcctatacccggtaatgtaattttgttgcttggtttcatgtttaccatattgagttatgt 26192920  T

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Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 26176534 - 26176612
Alignment:
Q  132 ttggattcatgggtatgggtcttgtacccggtagtgtaacctggattcttggcttcatgtttaccatattgagttatgt 210  Q
    ||||||| |||| |||||||| | ||||||||| |||||  ||| | ||||| ||||||||||||||||||||||||||    
T  26176534 ttggatttatggttatgggtcctatacccggtaatgtaatttggttgcttggtttcatgtttaccatattgagttatgt 26176612  T

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Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 26163778 - 26163861
Alignment:
Q  127 gttcattggattcatgggtatgggtcttgtacccggtagtgtaacctggattcttggcttcatgtttaccatattgagttatgt 210  Q
    ||||||||||||||||| |||   |||||||||||||||||||| || | ||||||||||| |||||   ||||||||| ||||    
T  26163778 gttcattggattcatggctataaatcttgtacccggtagtgtaatcttggttcttggcttcgtgtttgaaatattgagtcatgt 26163861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 26192927 - 26193007
Alignment:
Q  130 cattggattcatgggtatgggtcttgtacccggtagtgtaacctggattcttggcttcatgtttaccatattgagttatgt 210  Q
    |||||||||||||| |||||||| | ||||| ||| |||||  | | |  |||||||||||||||||||||  ||||||||    
T  26192927 cattggattcatggttatgggtcatatacccagtaatgtaatttagttaattggcttcatgtttaccatatccagttatgt 26193007  T

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