View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5523_high_6 (Length: 319)

Name: NF5523_high_6
Description: NF5523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5523_high_6
NF5523_high_6
[»] chr1 (3 HSPs)
chr1 (17-316)||(25166558-25166853)
chr1 (214-286)||(23935742-23935814)
chr1 (152-284)||(25147466-25147598)
[»] scaffold0007 (1 HSPs)
scaffold0007 (138-284)||(245914-246061)
[»] chr6 (3 HSPs)
chr6 (145-284)||(30424202-30424341)
chr6 (187-279)||(14216421-14216516)
chr6 (177-229)||(29821841-29821893)
[»] chr2 (2 HSPs)
chr2 (152-284)||(31367202-31367334)
chr2 (194-276)||(35464380-35464462)
[»] chr5 (1 HSPs)
chr5 (200-274)||(19877791-19877865)
[»] scaffold0173 (1 HSPs)
scaffold0173 (138-229)||(20531-20622)
[»] chr3 (1 HSPs)
chr3 (138-209)||(31045429-31045500)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 316
Target Start/End: Original strand, 25166558 - 25166853
Alignment:
Q  17 actatttgcttcatcccaacggcagttaactaccgttgcgatctgaagtttaacaaaacagcaactgcagttaacttcataatttgaaaacacccaaaac 116  Q
    |||||| |||| || | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25166558 actattggcttaattctaacggcagttaactaccgttgcgatctgaaatttaacaaaacagcaactgcagttaacttcataagttgaaaacacccaaaac 25166657  T
Q  117 ctttacaaatttcatccaatctcctccgattccactttgaagaaaatgaagtaaatcatttccacaaagacacaagtaagtagtattaatcattgtaaat 216  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25166658 ctttacaaatttcatccaatctcctctgattccactttgaagaaaatgaagtaaatcatttccacaaagacacaagtaagtagtattaatcattgtaaat 25166757  T
Q  217 gataatgttagttcgtatgtgttaatttttgttaattttggtagattgcatgtggttagggttaatgttggtcttgaaatttgctggttcatctcactcg 316  Q
    ||||||    ||||||||  |||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||| ||| | ||||| ||||    
T  25166758 gataat----gttcgtataggttaatctttgttaattttggtggattgcatatggttagggttaatgttggtcttgagatttgttggctgatctcgctcg 25166853  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 286
Target Start/End: Complemental strand, 23935814 - 23935742
Alignment:
Q  214 aatgataatgttagttcgtatgtgttaatttttgttaattttggtagattgcatgtggttagggttaatgttg 286  Q
    ||||||||||||||||  | |  ||| ||||||||||||||| ||||||||||||||||||||||| ||||||    
T  23935814 aatgataatgttagtttttgtaggtttatttttgttaattttagtagattgcatgtggttagggttcatgttg 23935742  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 284
Target Start/End: Original strand, 25147466 - 25147598
Alignment:
Q  152 tttgaagaaaatgaagtaaatcatttccacaaagacacaagtaagtagtattaatcattgtaaatgataatgttagttcgtatgtgttaatttttgttaa 251  Q
    ||||| |||||| ||| ||||||| || |||||  |||| ||||||||| || ||| ||   ||| |||||||||||| ||||  ||| |||||||||||    
T  25147466 tttgacgaaaatcaagcaaatcatctcaacaaaaccacaggtaagtagtgttgatcgtttgtaatcataatgttagtttgtataggtttatttttgttaa 25147565  T
Q  252 ttttggtagattgcatgtggttagggttaatgt 284  Q
    ||||||||| |||||| ||||||| ||| ||||    
T  25147566 ttttggtagtttgcatctggttagtgttgatgt 25147598  T

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Target: scaffold0007 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 138 - 284
Target Start/End: Original strand, 245914 - 246061
Alignment:
Q  138 tcctccgattccactttgaagaaaatgaagtaaatcatttccacaaagac--acaagtaagtagtattaatcattgtaaatgataatgttagttcgtatg 235  Q
    |||||| |||||||||||| |||||| ||  |||||||||||||||| ||  ||||||||||||||||||| ||| |||||||||||||||||| || |     
T  245914 tcctccaattccactttgacgaaaatcaaacaaatcatttccacaaa-actaacaagtaagtagtattaataattttaaatgataatgttagtttgtgta 246012  T
Q  236 tgttaatttttgttaattttggtagattgcatgtggttagggttaatgt 284  Q
     ||| | |||||||||||||||||||||  |||||||||||||| ||||    
T  246013 ggtttaattttgttaattttggtagattaaatgtggttagggttgatgt 246061  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 284
Target Start/End: Complemental strand, 30424341 - 30424202
Alignment:
Q  145 attccactttgaagaaaatgaagtaaatcatttccacaaagacacaagtaagtagtattaatcattgtaaatgataatgttagttcgtatgtgttaattt 244  Q
    |||||| ||||| |||||| || | |||||| ||| |||| ||||||||||||||| |||||||||   ||| |||||||||||| || |  ||| ||||    
T  30424341 attccattttgacgaaaatcaactcaatcatctcctcaaaaacacaagtaagtagtgttaatcatttgtaatcataatgttagtttgtgtaggtttattt 30424242  T
Q  245 ttgttaattttggtagattgcatgtggttagggttaatgt 284  Q
    |||||||||||| |||  ||||||||||||| ||| ||||    
T  30424241 ttgttaattttgttagtgtgcatgtggttagagtttatgt 30424202  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 279
Target Start/End: Original strand, 14216421 - 14216516
Alignment:
Q  187 cacaagtaagtagtattaatcattgtaaatgataatgttagttcgtatgtgttaatttttgtt---aattttggtagattgcatgtggttagggtt 279  Q
    |||||||||||||||||||||||    ||| |||||||||||| || |  |||  ||||||||   ||||||| ||| ||||||||||||||||||    
T  14216421 cacaagtaagtagtattaatcatccgtaatcataatgttagtttgtgtaggtttttttttgttgtgaattttgatagtttgcatgtggttagggtt 14216516  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 29821893 - 29821841
Alignment:
Q  177 tccacaaagacacaagtaagtagtattaatcattgtaaatgataatgttagtt 229  Q
    |||| ||| |||||||||||||||||||||||||   ||| ||||||||||||    
T  29821893 tccataaaaacacaagtaagtagtattaatcatttgtaatcataatgttagtt 29821841  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 284
Target Start/End: Original strand, 31367202 - 31367334
Alignment:
Q  152 tttgaagaaaatgaagtaaatcatttccacaaagacacaagtaagtagtattaatcattgtaaatgataatgttagttcgtatgtgttaatttttgttaa 251  Q
    ||||| |||||| |||| ||||||  |||||||  || || ||||||||||| ||||||   ||| |||||||||||| || |  ||| |||||||||||    
T  31367202 tttgacgaaaatcaagtgaatcatccccacaaaatcataaataagtagtattcatcatttgtaatcataatgttagtttgtgtaggtttatttttgttaa 31367301  T
Q  252 ttttggtagattgcatgtggttagggttaatgt 284  Q
    ||||| ||| |||||||||||||||||| ||||    
T  31367302 ttttgctagtttgcatgtggttagggttgatgt 31367334  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 276
Target Start/End: Complemental strand, 35464462 - 35464380
Alignment:
Q  194 aagtagtattaatcattgtaaatgataatgttagttcgtatgtgttaatttttgttaattttggtagattgcatgtggttagg 276  Q
    |||||||||||||||||   ||| ||||||||||||  | |  ||| |||||||||||||||  ||| |||||||||||||||    
T  35464462 aagtagtattaatcatttgtaatcataatgttagtttatgtaggtttatttttgttaattttaatagtttgcatgtggttagg 35464380  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 274
Target Start/End: Complemental strand, 19877865 - 19877791
Alignment:
Q  200 tattaatcattgtaaatgataatgttagttcgtatgtgttaatttttgttaattttggtagattgcatgtggtta 274  Q
    ||||||||||| | ||||||||||||||||| | |  ||| ||||||||||||||| ||||||||||||||||||    
T  19877865 tattaatcatttttaatgataatgttagttcttgtaggtttatttttgttaattttcgtagattgcatgtggtta 19877791  T

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Target: scaffold0173 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 229
Target Start/End: Complemental strand, 20622 - 20531
Alignment:
Q  138 tcctccgattccactttgaagaaaatgaagtaaatcatttccacaaagacacaagtaagtagtattaatcattgtaaatgataatgttagtt 229  Q
    |||||| |||||| ||||| |||| | |||| |||||| |||||||| |||||||||| || |||||||||||   ||| ||||||||||||    
T  20622 tcctccaattccattttgacgaaattcaagtgaatcatctccacaaaaacacaagtaaataatattaatcatttataatcataatgttagtt 20531  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 209
Target Start/End: Complemental strand, 31045500 - 31045429
Alignment:
Q  138 tcctccgattccactttgaagaaaatgaagtaaatcatttccacaaagacacaagtaagtagtattaatcat 209  Q
    |||||| |||||| ||||| |||| | |||| |||||| |||||||| ||||||||||||||| ||||||||    
T  31045500 tcctccaattccattttgatgaaattcaagtgaatcatctccacaaaaacacaagtaagtagttttaatcat 31045429  T

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