View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5523_high_8 (Length: 294)
Name: NF5523_high_8
Description: NF5523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5523_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 42271936 - 42271652
Alignment:
| Q |
1 |
aatcaccaaaaggtagtttgaaatgacaattagggtcagaatcatgtgtgtagtgattatgatccatattggatgaattagaattattcaaattagtaga |
100 |
Q |
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| T |
42271936 |
aatcaccaaaaggtagtttgaaatgacaattagggtcagaatcatgtgtgtagtgattatgatccatattggacgaattagaattattcaaattagtaga |
42271837 |
T |
|
| Q |
101 |
caaattgttatttgtttgtgaatcaaagtggctactaacttcagggtcaggtggggcaatagaccaagtgcttacaagattggataattttgtcaacctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42271836 |
caaattgttatttgtttgtgaatcaaagtggctactaacttcagggtcaggtggggcaatagaccaagtgcttacaagattggataattttgtcaacctt |
42271737 |
T |
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| Q |
201 |
tcattattctcaataagagcttcactgtacccatttaagtgcttctcaaaattagtattgaatgaagttgaaccactagtattat |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42271736 |
tcattattctcaataagagcttcactgtacccatttaagtgcttctcaaaattagtattgaatgaagttgaaccactagtattat |
42271652 |
T |
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