View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5523_low_1 (Length: 475)
Name: NF5523_low_1
Description: NF5523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5523_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 4066576 - 4066850
Alignment:
| Q |
1 |
tctgataaaagaatgtgttacaattcttttctacaagaaatttcattattaaggtgaaagttcacataagtgatgttgaaacaaatatatgtggtataaa |
100 |
Q |
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| T |
4066576 |
tctgataaaagaatgtgttacaattcttttctacaagaaatttcattattaaggtgaaagttcacttaagtgatgttgaaacaaatatatgtggtataaa |
4066675 |
T |
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| Q |
101 |
agaattgttatcaaagtgcagcttctgtttcaacacatgcaactttatactcattaccagaactagaattaaaatcctctacaaaagatccaagatacta |
200 |
Q |
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| T |
4066676 |
agaattgttatcaaagtgcagcttctgtttcaacacatgcaactttatactcattaccagaactagaattaaaatcctctacaaaagatccaagatacta |
4066775 |
T |
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| Q |
201 |
atccacacaaaataccatgtcaaaaatgcttgtaaccttgattttgtgaagcaacaccatacaagcattctaatc |
275 |
Q |
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| T |
4066776 |
atccacacaaaagatcatgtcaaaaatgcttgtaaccttgattttgtgaagcaacaccatacaagcattctaatc |
4066850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 340 - 458
Target Start/End: Original strand, 4066915 - 4067033
Alignment:
| Q |
340 |
tggaataacttacattagaaagaatttccctcaattttcggcggaatctcttcacccttgtatcaaacaacaaagatcagtagcttttactgctctccaa |
439 |
Q |
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| T |
4066915 |
tggaataaattacattagaaagaatttccctcaattttcagcggaatctcttcacccttgtatcaaacaacaaagatcagtagcttttactgctctccaa |
4067014 |
T |
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| Q |
440 |
atgcaaaggttgcggttat |
458 |
Q |
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| T |
4067015 |
acgcaaaggttgcggttat |
4067033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 396 - 452
Target Start/End: Original strand, 4066119 - 4066175
Alignment:
| Q |
396 |
cttgtatcaaacaacaaagatcagtagcttttactgctctccaaatgcaaaggttgc |
452 |
Q |
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| T |
4066119 |
cttgtatcaaacaacaaagagcagtagcttttgctcctatccaaatgcaaaggttgc |
4066175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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