View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5523_low_11 (Length: 288)
Name: NF5523_low_11
Description: NF5523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5523_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 38276441 - 38276180
Alignment:
| Q |
18 |
aagatggtccttcatacgtaaggtatactccatcatcacaattcagttgcttctcggcatcgctgttgcattcgccattattttcgttcatcccattgct |
117 |
Q |
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| T |
38276441 |
aagatggtccttcatacgtaaggtatactccatcatcacaattcagttgcttctgggcatcgctgttgcattcgccattatttttgttcatcccattgct |
38276342 |
T |
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| Q |
118 |
aatttcttcttcaactccaaactaagcgatggtcttcgcattgtcctcttcattgttcccttcataagtatgttttatatcttcatcataacttgggtac |
217 |
Q |
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| T |
38276341 |
aatttcttcttcaactccaaactaagccatgttcttcgcattgtcctcttcattgttcccttcataagtatgttttatatcttcatcataacttgggtac |
38276242 |
T |
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| Q |
218 |
tttttctgttattgtatttcataacactcttacttactatttgtttcattttgcagtattat |
279 |
Q |
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| T |
38276241 |
tttttctgttattgtatttcataacactcttacttactatttgtttcattttgcagttttat |
38276180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 38272727 - 38272473
Alignment:
| Q |
18 |
aagatggtccttcatacgtaaggtatactccatcatcacaattcagttgcttctcggcatcgctgttgcattcgccattattttcgttcatcccattgct |
117 |
Q |
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||||||| ||||||||| |||||||||||||||| |||| |||||||||||||| ||| || ||||| | | || |||||||||| ||| ||||| |
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| T |
38272727 |
aagatggcccttcatacttaaggtatactccatcctcacctttcagttgcttctcaccattgccgttgcctcagtagttgttttcgttcaccccgttgct |
38272628 |
T |
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| Q |
118 |
aatttcttcttcaactccaaactaagcgatggtcttcgcattgtcctcttcattgttcccttcataagtatgttttatatcttcatcataacttgggtac |
217 |
Q |
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| T |
38272627 |
aatttcttcgtcaactccaaactaggctatgctctttacattgtccttctctttgttccattcataagtatgttttatatcttcatcataactt-ggtac |
38272529 |
T |
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| Q |
218 |
tttttctgttattgtatttcataacactcttacttactatttgtttcattttgcag |
273 |
Q |
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| T |
38272528 |
tttttctgttattgaatttcataacactcttatttactatttgttctattttgcag |
38272473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 38314846 - 38314792
Alignment:
| Q |
18 |
aagatggtccttcatacgtaaggtatactccatcatcacaattcagttgcttctc |
72 |
Q |
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|||||||||||||||||||||||| || ||||||||||| |||||||||||||| |
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| T |
38314846 |
aagatggtccttcatacgtaaggtttattccatcatcacttttcagttgcttctc |
38314792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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