View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5523_low_12 (Length: 281)
Name: NF5523_low_12
Description: NF5523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5523_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 51935386 - 51935632
Alignment:
| Q |
17 |
cattgtatatagtgaaatctggggtaccaaattcctctagctcttcaggtgttggtcggatgcacctgtnnnnnnnttgtcgtataattgtgcatgctaa |
116 |
Q |
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| T |
51935386 |
cattgtatatagtgaaatctggggtaccaaattcctctagctcttcaggtgttggtcggatgcacctgtaaaaaaattgtcgtataattgtgcatgctaa |
51935485 |
T |
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| Q |
117 |
atctagtttttaaggttgcaaagaattaattggtacggcttaaaatatttgtgtgaaaaagataggtgattccattagtactcacatattatgcataaat |
216 |
Q |
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| T |
51935486 |
atctagtttttaaggttgcaaagaattaattggtacggcttaaaatatttgtgtgaaaaagataggtgattccattagtactcacatattatgcataaat |
51935585 |
T |
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| Q |
217 |
agagaatgataagctcttgcagatactattcggactttgattctgtg |
263 |
Q |
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| T |
51935586 |
agagaatgataagctcttgcagatactattcggactttgattctgtg |
51935632 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 262
Target Start/End: Original strand, 28138296 - 28138358
Alignment:
| Q |
200 |
acatattatgcataaatagagaatgataagctcttgcagatactattcggactttgattctgt |
262 |
Q |
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| T |
28138296 |
acatgttatgcataaagagtgaatgataagctctggcagagacaatcctgactttgattctgt |
28138358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 12996084 - 12996152
Alignment:
| Q |
17 |
cattgtatatagtgaaatctggggtaccaaattcctctagctcttcaggtgttggtcggatgcacctgt |
85 |
Q |
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| T |
12996084 |
cattgtatatagtgaagtccggagtaccaaaattctccagctcttcaggactgggtcggatacacctgt |
12996152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 13070737 - 13070805
Alignment:
| Q |
17 |
cattgtatatagtgaaatctggggtaccaaattcctctagctcttcaggtgttggtcggatgcacctgt |
85 |
Q |
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| T |
13070737 |
cattgtatatagtgaagtccggagtaccaaaattctccagctcttcaggactgggtcggatacacctgt |
13070805 |
T |
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