View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5523_low_18 (Length: 236)
Name: NF5523_low_18
Description: NF5523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5523_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 52768592 - 52768809
Alignment:
| Q |
4 |
agcatagggaacaaggaaaaatcaattcgacaagggagaaattggctttcgtacttctaaataagagctatatgcagttaaatgggatacgatgtcaaag |
103 |
Q |
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| T |
52768592 |
agcatagagaacaaggaaaaatcaattcgacaagggagaaattggctttcgtacttctaaataagagctatatgcagttaaatgggatacaatgtcaaag |
52768691 |
T |
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| Q |
104 |
atattttaatgaaaatggatgaaagagaaaagtgtggaaaataaacctgcgtaaaagaaagatttactagataagaaataaactgtccaccagttatcat |
203 |
Q |
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| T |
52768692 |
atattttaatgaaaatggatgaaagagacaagtgtggaaaataaacctgcgtaaaagaaagatttactagataagaaataaactgtccaccagttatcat |
52768791 |
T |
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| Q |
204 |
aagcacgtttgtggctac |
221 |
Q |
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| T |
52768792 |
aagcacgtttgtggctac |
52768809 |
T |
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Back To:
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 216
Target Start/End: Original strand, 38013711 - 38013765
Alignment:
| Q |
162 |
aagatttactagataagaaataaactgtccaccagttatcataagcacgtttgtg |
216 |
Q |
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| T |
38013711 |
aagatttacgaggtaagaaagaaactgtccaccagttatcataagcacatttgtg |
38013765 |
T |
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