View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5523_low_3 (Length: 457)
Name: NF5523_low_3
Description: NF5523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5523_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 11 - 427
Target Start/End: Original strand, 17398542 - 17398956
Alignment:
| Q |
11 |
caaagggttaagacaaaatcaaaaccatggtgcctgccagggtcaacgattaactaagtgatcgtgacagataaaaatcgtgtgatcatcgcattgacgc |
110 |
Q |
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| T |
17398542 |
caaagggttaagacaaaatcaaaaccatggtgcctgccagggtcagcgattaactaagtgaccgtgacagataaaaatcgtgtgatcatcgcattgacgc |
17398641 |
T |
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| Q |
111 |
catggctaaacaatatgattatgatatcaggataataggtaaattatttgattgtgaccttaaaaatatgatgacaaaaatcatatactacaatgatgtg |
210 |
Q |
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| T |
17398642 |
catggctaaaccatatgattatgatatcaggataatgggtaaattatgtgattgtgaccttaaaaataggatgacaaaaatcatatactacaatgatgtg |
17398741 |
T |
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| Q |
211 |
aagaataaatgcaggttctgaagaaaaaacacatgtctggacaattcatgcatnnnnnnnnntcgtaattaggataaaaaactcataattgagataacaa |
310 |
Q |
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| T |
17398742 |
aagaatata-gcaggttctgaagaaaaaacacatgtctggacaattcatgcat-aaaaaaaatcgtaattaggatcaaaaactcataattgagataacaa |
17398839 |
T |
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| Q |
311 |
agagaaataagagctttttgccatcatgctaaacaaaagaaattattccacaaaaaattattagtagactatataaccaaacaacaatcagtaacaaaag |
410 |
Q |
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| T |
17398840 |
agagaaataagagctttttgccatcatgctaaacaaaagaaattattccacaaaaaattattaatacatcatataaccaaacaacaatcaggaacacaag |
17398939 |
T |
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| Q |
411 |
ttaacagtttcttagag |
427 |
Q |
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| T |
17398940 |
tcaaaagtttcttagag |
17398956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 348
Target Start/End: Original strand, 4816540 - 4816583
Alignment:
| Q |
305 |
taacaaagagaaataagagctttttgccatcatgctaaacaaaa |
348 |
Q |
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| T |
4816540 |
taacaaagagaaataagagccttttggcatcatgctaaacaaaa |
4816583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 416
Target Start/End: Original strand, 17379766 - 17379844
Alignment:
| Q |
339 |
ctaaacaaaagaaattattccacaaaaaattattagtagacta-tataaccaaacaacaatcagtaacaaaagttaaca |
416 |
Q |
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|||||||||| |||||||||| |||||||||| | |||||| |||||||||| |||||||| |||| ||||||||| |
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| T |
17379766 |
ctaaacaaaattaattattccataaaaaattatcatcagactaatataaccaaaaaacaatcaataacgcaagttaaca |
17379844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 17404946 - 17404979
Alignment:
| Q |
11 |
caaagggttaagacaaaatcaaaaccatggtgcc |
44 |
Q |
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| T |
17404946 |
caaagggttaagacaaaaacaaaaccatggtgcc |
17404979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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