View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5523_low_4 (Length: 395)
Name: NF5523_low_4
Description: NF5523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5523_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 7 - 379
Target Start/End: Original strand, 32107421 - 32107794
Alignment:
| Q |
7 |
cattctccctctccttttatttagtcaattccttctttttctttttcttcaaattatatcatactacttgaaatgcaatgatattttcctttcaaaaaga |
106 |
Q |
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| T |
32107421 |
cattctccctctccttttatttagtcaattccttctttttctttttcttgaaattatatcatagtacttcaaatgcaatgatattttcctttcaaaaaga |
32107520 |
T |
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| Q |
107 |
aatgcaatgatatttctattgaaaaaaccaaaaccaagtttcgtgtatcttcctctcaaaaaagataagttgcatgtgtcttaaaaataagatcttattt |
206 |
Q |
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| T |
32107521 |
aatgcaatgatatttctattgaaaaaaccaaaaccaagtttcgtgtatcttcctctcaaaaaagataagttgcatgtgtcttgaaaataagatcttattt |
32107620 |
T |
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| Q |
207 |
gagtttataaaaaatgaaatatatcaccttataaacttaatttatatggatgaattatacttaatatatgaacctaataatttcaacacatcttaatttt |
306 |
Q |
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| T |
32107621 |
gattttataaagagtgatatatttcaccttataaaatagatttatatggatgaattatgctcaatatatgaacctaataatttcaacacatcttaatttt |
32107720 |
T |
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| Q |
307 |
tgtt-ggacttctggatagccttaacattatggtcaatcatcacatttgattaagaacaatcacataagtaagt |
379 |
Q |
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|||| ||||||||||||||| ||||||||||| | |||||||||||||| ||||||||||||||| |||||||| |
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| T |
32107721 |
tgttgggacttctggatagctttaacattatgattaatcatcacatttggttaagaacaatcacacaagtaagt |
32107794 |
T |
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