View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5523_low_5 (Length: 366)
Name: NF5523_low_5
Description: NF5523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5523_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 6 - 274
Target Start/End: Original strand, 26823694 - 26823966
Alignment:
| Q |
6 |
gtagattattcttaatcaccatcgttatcacaatcctacgcgttaacattaaatcctataaacgtacnnnnnnnntgaaccttcatgatactttctttgt |
105 |
Q |
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| T |
26823694 |
gtagattattcttaatcaccatcgttatcacaatcctacgcgttaacattaaatcctataaacgtacaaaaaacatgaaccttcatgatactttctttgt |
26823793 |
T |
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| Q |
106 |
tcttagatatatcatttacttttata----tatgtttaaaatcaatcaaattatcatcaaattattatataagaaagtttaaacgattcctcccattatt |
201 |
Q |
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| T |
26823794 |
tcctagatatatcatttacttttatatatatatgtttaaaatcaatcaaattatcatcaaattattatataagaaagtttaaacgattcctcccattatt |
26823893 |
T |
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| Q |
202 |
ctcacacatatatttattacctaacagaataaacaagactctgatctcaacacaaacaaaaactaagagccag |
274 |
Q |
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| T |
26823894 |
ctcacacatatatttattacctaacagaacaaacaagactctgatctcaacacaaacaaaaactaagagccag |
26823966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 157 - 267
Target Start/End: Original strand, 26835862 - 26835969
Alignment:
| Q |
157 |
atcaaattattatataagaaagtttaaacgattcctcccattattctcacacatatatttattacctaacagaataaacaagactctgatctcaacacaa |
256 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| || |||||||||| |||||||| |||||||||| ||||| |
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| T |
26835862 |
atcaaattattatataagaaagtttaaacgatccctctcattattctcacacatatat---ttgcctaacagaacaaacaagattctgatctcatcacaa |
26835958 |
T |
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| Q |
257 |
acaaaaactaa |
267 |
Q |
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| T |
26835959 |
acaaaaactaa |
26835969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 311 - 366
Target Start/End: Original strand, 26824065 - 26824120
Alignment:
| Q |
311 |
tcaccaacctcgtcatcattattatcatcatggcttatccttatcaaccacaacct |
366 |
Q |
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| T |
26824065 |
tcaccaacctcgtcatcattattatcatcatggcttatccttatcaaccacaacct |
26824120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 26805141 - 26805215
Alignment:
| Q |
122 |
tacttttatatatgtttaaaatcaatcaaattatcatcaaattattatataagaaagtttaaacgattcctccca |
196 |
Q |
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|||| |||| ||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||| |
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| T |
26805141 |
tactcttatttatgtttaaaatcaatcaaatcatcatcaagttgttatataagaaagtttaaacgatccctccca |
26805215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 26836027 - 26836070
Alignment:
| Q |
323 |
tcatcattattatcatcatggcttatccttatcaaccacaacct |
366 |
Q |
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| T |
26836027 |
tcatcgttactatcatcatggcttatccttatcaaccacaacct |
26836070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 365
Target Start/End: Original strand, 26805334 - 26805366
Alignment:
| Q |
333 |
tatcatcatggcttatccttatcaaccacaacc |
365 |
Q |
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| T |
26805334 |
tatcatcatggcttatccttatcaaccacaacc |
26805366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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