View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5523_low_8 (Length: 300)
Name: NF5523_low_8
Description: NF5523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5523_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 37514859 - 37515121
Alignment:
| Q |
19 |
cgttaaatcaaagtaattatttattacctggtgaaaaccgggttcatatgttaatccaacaccaagttctgctatgcaagagaacaccctagcatcactt |
118 |
Q |
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| T |
37514859 |
cgttaaatcaaagtaattatttattacctggtgaaaaccgggttcatatgttaatccaacaccaagttctgctatgcaagagaacaccctagcatcactt |
37514958 |
T |
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| Q |
119 |
ccataaagatgagaatatctttcaatgcatgaatcaaaaaccttagctaaaacatttgctaaagaagcacttaaagcaaaaccacctccaccaaaagcca |
218 |
Q |
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| T |
37514959 |
ccataaagatgagaatatctttcaatacatgaatcaaaaaccttagctaaaacatttgctaaagaagcacttaaagcaaaaccacctccaccaaaagcca |
37515058 |
T |
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| Q |
219 |
ttccaaaaccaaaagcttgagacccttcataattttccgaataagctccaacatagtaccaaa |
281 |
Q |
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| T |
37515059 |
ttccaaaaccaaaagtttgagacccttcataattttccgaataagctccaacatagtaccaaa |
37515121 |
T |
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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 42 - 231
Target Start/End: Original strand, 16458183 - 16458372
Alignment:
| Q |
42 |
ttacctggtgaaaaccgggttcatatgttaatccaacaccaagttctgctatgcaagagaacaccctagcatcacttccataaagatgagaatatctttc |
141 |
Q |
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||||||| |||||||| ||||||| ||| ||||| |||||||||||||||| |||||| | || ||| ||||||||||||| ||||||| || ||||| |
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| T |
16458183 |
ttacctgatgaaaacctggttcatgtgtcaatcctacaccaagttctgctaaacaagagtaaactctaccatcacttccatatagatgagggtacctttc |
16458282 |
T |
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| Q |
142 |
aatgcatgaatcaaaaaccttagctaaaacatttgctaaagaagcacttaaagcaaaaccacctccaccaaaagccattccaaaaccaaa |
231 |
Q |
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| T |
16458283 |
caaacaagaatcaaaaacctttgccaaaactttagcaagagatgaactaatagcaaaaccagcaccaccaaaagccattccaaaaccaaa |
16458372 |
T |
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