View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5524-Insertion-2 (Length: 1020)

Name: NF5524-Insertion-2
Description: NF5524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5524-Insertion-2
NF5524-Insertion-2
[»] chr4 (8 HSPs)
chr4 (91-750)||(23446193-23446828)
chr4 (110-316)||(24298081-24298287)
chr4 (110-316)||(23875290-23875496)
chr4 (110-310)||(23447963-23448163)
chr4 (110-316)||(23423457-23423663)
chr4 (752-979)||(23445901-23446120)
chr4 (106-316)||(26827838-26828048)
chr4 (348-422)||(23447834-23447907)
[»] chr8 (1 HSPs)
chr8 (106-316)||(35961620-35961830)
[»] chr1 (1 HSPs)
chr1 (117-268)||(12165045-12165198)
[»] chr2 (3 HSPs)
chr2 (176-316)||(41244363-41244503)
chr2 (176-316)||(41257791-41257931)
chr2 (110-174)||(41244594-41244658)


Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 91 - 750
Target Start/End: Complemental strand, 23446828 - 23446193
Alignment:
Q  91 ttcgaagaagggtatatatgctcagcgtgtcggaaccggtgctccagtatacctggcagcagttcttgaatatcttgctgctgaagttcttgtgttggct 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23446828 ttcgaagaagggtatatatgctcagcgtgtcggaaccggtgctccagtatacctggcagcagttcttgaatatcttgctgctgaagttcttgagttggct 23446729  T
Q  191 ggaaatgcagctcctgataacaagaagaatagaattattccaaggcatttgttgtttgctgttatgaatgatgaagaacttggtaaactacttgtaggtg 290  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23446728 ggaaatgcagctcgtgataacaagaagaatagaattattccaaggcatttgttgtttgctgttatgaatgatgaagaacttgggaaactacttgtaggtg 23446629  T
Q  291 ttacaattgctcatggtggtattcttttaactaagaaggccgaaaaagctgcttctgctaaggaacctaagtctcccaaaaaagttggaaagtctccaaa 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23446628 ttacaattgctcatggtggtattcttttaactaagaaggccgaaaaagctgcttctgctaaggaacctaagtctcccaaaaaagttggaaagtctccaaa 23446529  T
Q  391 gaagggcttggatctttaggaaaagttagatannnnnnnnnnnnnnnnnnnngttgcttttgaatcagtaatgaagtaatgagatctttttgtgtgtgag 490  Q
    ||||||||||||||||||||||||||||||||                    ||||||||||||||        ||||||||||||||||  ||| ||||    
T  23446528 gaagggcttggatctttaggaaaagttagatattttatagtattttatttttgttgcttttgaatc--------agtaatgagatctttt--tgtttgag 23446439  T
Q  491 tttggtggatttaatgatatttgacttaaaaaatctttctattctataatttcgttgagtttactcattagaagtaattcattggccaattgttaggttt 590  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||          |||||||||  |||||||||||||||||||||||    
T  23446438 tttggtggatttaatgatacttgacttaaaaaatctttctattctataatttcgtt----------attagaagt-gttcattggccaattgttaggttt 23446350  T
Q  591 gcactagtgtattttnnnnnnnnncctgagacctgtttcgaccaaacctgagtttaaaagatcagactattgactctatacagaactttaccataatttt 690  Q
    |||||||| ||||||         ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23446349 gcactagtatatttt-taaaataacctgagacctgtttcgacc-aacctgagtttaaaagatcagaatattgactctatacagaactttaccataatttt 23446252  T
Q  691 taaacggcaatgtaaattccaagattgcggtaaatagctaataaatctgccatattcttg 750  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23446251 taaactgcaatgt-aattccaagattgcggtaaatagctaataaatctgccatattcttg 23446193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 110 - 316
Target Start/End: Original strand, 24298081 - 24298287
Alignment:
Q  110 gctcagcgtgtcggaaccggtgctccagtatacctggcagcagttcttgaatatcttgctgctgaagttcttgtgttggctggaaatgcagctcctgata 209  Q
    ||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||    
T  24298081 gctcagcgtgtcggaacaggtgctccggtatacctagcagcagttcttgaatatcttgctgctgaagttcttgagttggctggaaatgcagcacgtgata 24298180  T
Q  210 acaagaagaatagaattattccaaggcatttgttgtttgctgttatgaatgatgaagaacttggtaaactacttgtaggtgttacaattgctcatggtgg 309  Q
    |||||||||||||||| |||||||||||| ||||||| ||||||| |||||||||||| ||||||||| | |||   |||||||| ||||||||||||||    
T  24298181 acaagaagaatagaatcattccaaggcatgtgttgttggctgttaggaatgatgaagagcttggtaaattgcttaatggtgttaccattgctcatggtgg 24298280  T
Q  310 tattctt 316  Q
    | |||||    
T  24298281 tgttctt 24298287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 110 - 316
Target Start/End: Original strand, 23875290 - 23875496
Alignment:
Q  110 gctcagcgtgtcggaaccggtgctccagtatacctggcagcagttcttgaatatcttgctgctgaagttcttgtgttggctggaaatgcagctcctgata 209  Q
    ||||||||||| || || ||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| |||||||||||||||||| | |||||    
T  23875290 gctcagcgtgtaggcacaggtgctccagtatacctagcagcagttcttgaatatctcgctgctgaggttcttgagttggctggaaatgcagcacgtgata 23875389  T
Q  210 acaagaagaatagaattattccaaggcatttgttgtttgctgttatgaatgatgaagaacttggtaaactacttgtaggtgttacaattgctcatggtgg 309  Q
    |||||||||||||||| |||||||||||| ||||||| ||||||| |||||||||||||||||||||| | |||   |||||||| ||||||||||||||    
T  23875390 acaagaagaatagaatcattccaaggcatgtgttgttggctgttaggaatgatgaagaacttggtaaattgcttaatggtgttaccattgctcatggtgg 23875489  T
Q  310 tattctt 316  Q
    | |||||    
T  23875490 tgttctt 23875496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 110 - 310
Target Start/End: Complemental strand, 23448163 - 23447963
Alignment:
Q  110 gctcagcgtgtcggaaccggtgctccagtatacctggcagcagttcttgaatatcttgctgctgaagttcttgtgttggctggaaatgcagctcctgata 209  Q
    ||||||||||| || || ||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| |||||||||||||||||| | |||||    
T  23448163 gctcagcgtgtaggcacaggtgctccagtatacctagcagcagttcttgaatatctcgctgctgaggttcttgagttggctggaaatgcagcacgtgata 23448064  T
Q  210 acaagaagaatagaattattccaaggcatttgttgtttgctgttatgaatgatgaagaacttggtaaactacttgtaggtgttacaattgctcatggtgg 309  Q
    |||||||||||||||| |||||||||||| ||||||| ||||||| |||||||||||||||||||||| | |||   |||||||| ||||||||||||||    
T  23448063 acaagaagaatagaatcattccaaggcatgtgttgttggctgttaggaatgatgaagaacttggtaaattgcttaatggtgttaccattgctcatggtgg 23447964  T
Q  310 t 310  Q
    |    
T  23447963 t 23447963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 110 - 316
Target Start/End: Complemental strand, 23423663 - 23423457
Alignment:
Q  110 gctcagcgtgtcggaaccggtgctccagtatacctggcagcagttcttgaatatcttgctgctgaagttcttgtgttggctggaaatgcagctcctgata 209  Q
    ||||||||||| || || ||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| |||||||||||||||||| | |||||    
T  23423663 gctcagcgtgtaggcacaggtgctccagtatacctagcagcagttcttgaatatctcgctgctgaggttcttgagttggctggaaatgcagcacgtgata 23423564  T
Q  210 acaagaagaatagaattattccaaggcatttgttgtttgctgttatgaatgatgaagaacttggtaaactacttgtaggtgttacaattgctcatggtgg 309  Q
    |||||||||||||||| |||||||||||| ||||||| ||||||| |||||||||||| ||||||||| | |||   |||||||| ||||||||||||||    
T  23423563 acaagaagaatagaatcattccaaggcatgtgttgttggctgttaggaatgatgaagatcttggtaaattgcttaatggtgttaccattgctcatggtgg 23423464  T
Q  310 tattctt 316  Q
    | |||||    
T  23423463 tgttctt 23423457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 752 - 979
Target Start/End: Complemental strand, 23446120 - 23445901
Alignment:
Q  752 tatcattgcagaaaattatggatgttaatttgctgtatttcaacaacattatccatctacaatgtactttgggggaatttcagggttcactgaactatta 851  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  23446120 tatcattgcagaaaattatggatgttaatt-gctgtatttcaacaacagtatccatctacaatgtacttt-ggggaattttagggttcactgaactatta 23446023  T
Q  852 attggatggacacaaggtgttgcaac-atctcatggccatagaataacaatcttcattacatttttggaggccataataaaaatgatacaacgggagata 950  Q
    | | ||| ||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||  |||||||    
T  23446022 a-tcgat-gacac-aggtgttgcaacgatctcat-gccatagaataacaatcttcattacattttt-gaagccataataaaaatgatacaa-tggagata 23445929  T
Q  951 tgaaaaaagcaatcgaagtaaggtagctt 979  Q
     | |||||||||||||||||| |||||||    
T  23445928 ag-aaaaagcaatcgaagtaaagtagctt 23445901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 106 - 316
Target Start/End: Original strand, 26827838 - 26828048
Alignment:
Q  106 atatgctcagcgtgtcggaaccggtgctccagtatacctggcagcagttcttgaatatcttgctgctgaagttcttgtgttggctggaaatgcagctcct 205  Q
    |||||||||||||||||| ||||||||||| || ||||| || |||||||||||||| || |||||||| |||||||  ||||| ||||| || |||| |    
T  26827838 atatgctcagcgtgtcggcaccggtgctccggtttacctagctgcagttcttgaatacctcgctgctgaggttcttgaattggcaggaaacgctgctcgt 26827937  T
Q  206 gataacaagaagaatagaattattccaaggcatttgttgtttgctgttatgaatgatgaagaacttggtaaactacttgtaggtgttacaattgctcatg 305  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||| ||||| ||||| ||||  |||||||||||||||||||    
T  26827938 gataacaagaagaatagaatcattccaaggcatttgttgttggctgttaggaatgatgaagagcttggaaaactgcttgctggtgttacaattgctcatg 26828037  T
Q  306 gtggtattctt 316  Q
    ||||| |||||    
T  26828038 gtggtgttctt 26828048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 348 - 422
Target Start/End: Complemental strand, 23447907 - 23447834
Alignment:
Q  348 ctaaggaacctaagtctcccaaaaaagttggaaagtctccaaagaagggcttggatctttaggaaaagttagata 422  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||| |||||| | |||||||    
T  23447907 ctaaggaacctaagtctcccaaaaaagctggaaagtctccaaagaa-ggcttagatctctaggaacaattagata 23447834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 4e-53; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 106 - 316
Target Start/End: Original strand, 35961620 - 35961830
Alignment:
Q  106 atatgctcagcgtgtcggaaccggtgctccagtatacctggcagcagttcttgaatatcttgctgctgaagttcttgtgttggctggaaatgcagctcct 205  Q
    ||||||||| |||||||| ||||||||||| || ||| | || || |||||||||||||||||||||||||||||||  |||||||| ||||| |||| |    
T  35961620 atatgctcaacgtgtcggcaccggtgctcctgtttacttagccgctgttcttgaatatcttgctgctgaagttcttgaattggctggtaatgctgctcgt 35961719  T
Q  206 gataacaagaagaatagaattattccaaggcatttgttgtttgctgttatgaatgatgaagaacttggtaaactacttgtaggtgttacaattgctcatg 305  Q
    ||||||||||||||||| ||||||||||||||| ||||||| ||||| | |||||||||||| ||||| ||| | ||||  |||||||| ||||||||||    
T  35961720 gataacaagaagaataggattattccaaggcatgtgttgttggctgtgaggaatgatgaagagcttgggaaattgcttgctggtgttaccattgctcatg 35961819  T
Q  306 gtggtattctt 316  Q
    ||||| |||||    
T  35961820 gtggtgttctt 35961830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 1e-50; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 117 - 268
Target Start/End: Original strand, 12165045 - 12165198
Alignment:
Q  117 gtgtcggaaccggtgctccagtatacctggcagcagttct--tgaatatcttgctgctgaagttcttgtgttggctggaaatgcagctcctgataacaag 214  Q
    |||||||||||||||||||||||||||| |||||||||||  ||||||||| |||||||| ||||||| |||||||||||||||||||| ||||||||||    
T  12165045 gtgtcggaaccggtgctccagtatacctagcagcagttctcttgaatatctcgctgctgaggttcttgagttggctggaaatgcagctcgtgataacaag 12165144  T
Q  215 aagaatagaattattccaaggcatttgttgtttgctgttatgaatgatgaagaa 268  Q
    ||||||||||| |||||||||||| ||||||| ||||||| ||| |||||||||    
T  12165145 aagaatagaatcattccaaggcatgtgttgttggctgttaggaacgatgaagaa 12165198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 4e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 176 - 316
Target Start/End: Complemental strand, 41244503 - 41244363
Alignment:
Q  176 gttcttgtgttggctggaaatgcagctcctgataacaagaagaatagaattattccaaggcatttgttgtttgctgttatgaatgatgaagaacttggta 275  Q
    |||||||  |||||||||||||| || | |||||||||||||||||| || |||||||||||  ||||||| || || | |||||||||||| || || |    
T  41244503 gttcttgaattggctggaaatgcggcacgtgataacaagaagaataggataattccaaggcacgtgttgttggcagtgaggaatgatgaagagctaggaa 41244404  T
Q  276 aactacttgtaggtgttacaattgctcatggtggtattctt 316  Q
    || || | |  || ||||||||||| ||||||||| |||||    
T  41244403 aattattagctggagttacaattgcacatggtggtgttctt 41244363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 316
Target Start/End: Original strand, 41257791 - 41257931
Alignment:
Q  176 gttcttgtgttggctggaaatgcagctcctgataacaagaagaatagaattattccaaggcatttgttgtttgctgttatgaatgatgaagaacttggta 275  Q
    ||||||| |||||||||||||||||| | ||| ||||||||||| || || || || |||||  ||||||| ||||| | ||| |||||||||||||| |    
T  41257791 gttcttgagttggctggaaatgcagcacgtgacaacaagaagaacaggatcatccctaggcacgtgttgttggctgtgaggaacgatgaagaacttggaa 41257890  T
Q  276 aactacttgtaggtgttacaattgctcatggtggtattctt 316  Q
    || |  | |  |||||||||||||| ||||| ||| |||||    
T  41257891 aattgttagctggtgttacaattgcacatggaggtgttctt 41257931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 41244658 - 41244594
Alignment:
Q  110 gctcagcgtgtcggaaccggtgctccagtatacctggcagcagttcttgaatatcttgctgctga 174  Q
    ||||||||||| || || |||||||| || ||||| || || |||||||||||||||||||||||    
T  41244658 gctcagcgtgttggtactggtgctcctgtttacctcgccgctgttcttgaatatcttgctgctga 41244594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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