View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5524-Insertion-3 (Length: 790)
Name: NF5524-Insertion-3
Description: NF5524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5524-Insertion-3 |
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Alignment Details
Target: chr6 (Bit Score: 392; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 6 - 595
Target Start/End: Original strand, 601764 - 602367
Alignment:
| Q |
6 |
caaatattgtgtctaacataccgattttatgtcataaaattagtttttggaaaagatatatggttgcattatctcttttataaatgatcaattgatatgt |
105 |
Q |
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| T |
601764 |
caaatattgtgtctaacataccgattttatgtcataaaattagcttttggaaaagatatatggttgcattatctcttttataaatgatcaattgatatgt |
601863 |
T |
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| Q |
106 |
tgaagaccaaaatcgttgggtatatagtggaaggacctagac--------------tcataatcgaagaggtacacaaatttaatgtccaacctagctct |
191 |
Q |
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| T |
601864 |
tgaagaccaaaatggttgagtatatagtggaaggacctagactcgtaatacgtgattcataatccaagaggtacacaaatttaatgtccaacccagctct |
601963 |
T |
|
| Q |
192 |
aataagatcacatcaagtggaggaaatctatgggnnnnnnntatatctactaataatcattattgttatttgcgttttgtagttatgtcgttaagttatt |
291 |
Q |
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| T |
601964 |
aataagatcacatcaagtggaggaaatctatggaaaaaaaaaatatctactaataatcattattgttatttgcgttttgtagttatgtcgttaagtttt- |
602062 |
T |
|
| Q |
292 |
agctaggaggggccacttaatcaatacggacaaatatttaaaaattgtttaaaattctgacaacaatcgatgatttgttttgacaatagaaattcatatc |
391 |
Q |
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| T |
602063 |
---taggagggaccacttagtcaatacggacaaatatttaaaaattgtttaaaattctgacaacaatcgatgatgtgttttgaaaatagaagttcatatc |
602159 |
T |
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| Q |
392 |
gtctttatgattagttgatgacctattnnnnnnnnnnntacaaggagaagcaaataagagtactacataccaatcatatcataacca------taaccat |
485 |
Q |
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| T |
602160 |
gtctttatggttaggtgataacctatt--aaaaaaaaatacaaggagaagcaaataagagtactacataccaatcatatcataaccataaccttaaccat |
602257 |
T |
|
| Q |
486 |
aaatttgatgttttgcatagtatttatgtagctcagttggttaattaggttcggatgcaaaccctagtaatgccttgggattgcaagctctaatctatct |
585 |
Q |
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| T |
602258 |
aaatttgatgttttgcatagtatttatgcagctcagttggtcaattaggttcggatgcaaaccctagtaatgccttgggattgcaagctctaatctatct |
602357 |
T |
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| Q |
586 |
aatttcaaac |
595 |
Q |
| |
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|||||||||| |
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| T |
602358 |
aatttcaaac |
602367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 658 - 764
Target Start/End: Original strand, 602430 - 602534
Alignment:
| Q |
658 |
cctatatatgtattagactgaccttgatgaaattaaaactcaatttatatattaatttttcctgtttttcttaaaaagttggccactaatagctaaattt |
757 |
Q |
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| T |
602430 |
cctataaatgtattagactgaccttgatgaaattaaa-ctcaatttatatattaatttttcctgtttttctt-aaaagttggccactaataactaaattt |
602527 |
T |
|
| Q |
758 |
gtccttc |
764 |
Q |
| |
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||||||| |
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| T |
602528 |
gtccttc |
602534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 430 - 565
Target Start/End: Original strand, 805016 - 805151
Alignment:
| Q |
430 |
tacaaggagaagcaaataagagtactacataccaatcatatcataaccataaccataaatttgatgttttgcatagtatttatgtagctcagttggttaa |
529 |
Q |
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|||||||| || ||||| ||||||||||||| | || ||||||||||||||||| ||| ||||||||||||||| | |||||| ||||||||| ||||| |
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| T |
805016 |
tacaaggaaaaacaaatgagagtactacatatctttcctatcataaccataaccaaaaagttgatgttttgcatattgtttatgcagctcagtttgttaa |
805115 |
T |
|
| Q |
530 |
ttaggttcggatgcaaaccctagtaatgccttggga |
565 |
Q |
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|||| ||||||||||||||||||||||||||||||| |
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| T |
805116 |
ttagtttcggatgcaaaccctagtaatgccttggga |
805151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 667 - 764
Target Start/End: Original strand, 805242 - 805336
Alignment:
| Q |
667 |
gtattagactgaccttgatgaaattaaaactcaatttatatattaatttttcctgtttttcttaaaaagttggccactaatagctaaatttgtccttc |
764 |
Q |
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| T |
805242 |
gtattagagtgaccttgatgaaattaaa-ctcaatatatatactaatttc-cctctttttcttaaaaa-ttggccactaataactaaatttgtccttc |
805336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 804642 - 804687
Alignment:
| Q |
46 |
tagtttttggaaaagatatatggttgcattatctcttttataaatg |
91 |
Q |
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| T |
804642 |
tagtttttggaaaagatatatggttgcattatctcttttataaatg |
804687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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