View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5524-Insertion-4 (Length: 721)
Name: NF5524-Insertion-4
Description: NF5524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5524-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 2e-66; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 39 - 203
Target Start/End: Original strand, 42768732 - 42768895
Alignment:
| Q |
39 |
tttactcactttaaatgattcaaattcaaaatcattttaaaggatgttcggcccattattcatttctcgatccatcatcatattacccccgtaataaatg |
138 |
Q |
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| T |
42768732 |
tttactcactttaaatgattcaaattcaaaatcattttaaaggatgttcggcccattattcatttctcgatccatcatcatattacccccgtaataaatg |
42768831 |
T |
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| Q |
139 |
ttataaaaagaggaggggtggaggtnnnnnnnngttccatcctaactccgtcacaaaccaccatg |
203 |
Q |
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| T |
42768832 |
ttataaaaagaggaggggtggaggtaaaaaaaag-tccatcgtaactccgtcacaaaccaccatg |
42768895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 364 - 644
Target Start/End: Original strand, 42769719 - 42769989
Alignment:
| Q |
364 |
taaaattttcatttttaaatttattaagtaaatgatctatttgattcacgctacttgataaagnnnnnnntattgattgtgtannnnnnnnnnnnnccgt |
463 |
Q |
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| T |
42769719 |
taaaattttcatttttagatttattaagtaaatgatctatttgattcactctacttgatagagaaaaaaatattgattgtgtatttttttttt---ccgt |
42769815 |
T |
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| Q |
464 |
taatagtatttgttgtcgggagaacttaaaaagacagtatagattagaaatcagatcttaaatgtttgttacagnnnnnnnnn--aaggataatgtttat |
561 |
Q |
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| T |
42769816 |
taatagtatttgttgtggggagaacttaaaaagacagtatagattagaaatcagatctt-------tgttacagtttttttttttaaggataatgtttat |
42769908 |
T |
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| Q |
562 |
tatggtatagtgtatataaatatagattcaaagtttctcctttaaaataatatttgactctgtataaataacaattaaattaa |
644 |
Q |
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| T |
42769909 |
tatggtatagtgtatataaatatagattc-aagtttctcctttaaaataatatttgactctgtataaat-acaattaaattaa |
42769989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 213 - 247
Target Start/End: Original strand, 42769580 - 42769614
Alignment:
| Q |
213 |
aaatgccaattgattgagttattaactactgctac |
247 |
Q |
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| T |
42769580 |
aaatgccaattgattgagttattaactactgctac |
42769614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 683 - 721
Target Start/End: Original strand, 42770258 - 42770295
Alignment:
| Q |
683 |
aaaaacacgatgaaaacatatacaaaatcaagcgctgca |
721 |
Q |
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| T |
42770258 |
aaaaacacgatgaaa-catatacaaaatcaagcgctgca |
42770295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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