View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5524-Insertion-5 (Length: 657)
Name: NF5524-Insertion-5
Description: NF5524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5524-Insertion-5 |
 | |
|
| [»] chr3 (22 HSPs) |
| |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] scaffold0603 (1 HSPs) |
| | |
|
| [»] scaffold0267 (3 HSPs) |
| | |
|
| [»] scaffold0137 (4 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 614; Significance: 0; HSPs: 22)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 8 - 657
Target Start/End: Original strand, 11495900 - 11496549
Alignment:
| Q |
8 |
atcctcttaactcaagttcagttaaggaaggaagttggtcaggtatgtctcctctcagtttcgggcacttacttagtaacagactttttagactaggaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11495900 |
atcctcttaactcaagttcagttaaggaaggaagattgtcaggtatgtctcctctcagtttcgggcacttacttagtaacagactttttagactaggaaa |
11495999 |
T |
|
| Q |
108 |
atttgtcgttgtacctccaatcaagttccattcctcccattctggcatatcctcaaagtgtagagtctccaaggagggaaatggttgaaatgaaggagaa |
207 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11496000 |
atttgtcgttgtacctccaatgaagttccattcctcccattctggcatatcctcaaagtgtagagtctccaaggagggaaatggttgaaatgaaggagaa |
11496099 |
T |
|
| Q |
208 |
ccatcacttccgtagaactctgtgctaacactctttattgaaagcatcgaatcaataatgagttctttcaaatttcccaattgtccaaggggtggaagcc |
307 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11496100 |
ctatcacttccgtagaactctgtgccaacactctttattgaaagcatcgaatcaataatgagttctttcaaatttcccaattgtccaaggggtggaagcc |
11496199 |
T |
|
| Q |
308 |
atatacacttgtcaaaattcgagatccttaaatacaccatgttgccaaataaaaaatcacccaaccaatttggagtgctgtatccaccatagcctttgat |
407 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11496200 |
atatacacttatcgaaattcgagatccttaaatacaccatgttgccaaataaaaaatcacccaaccaatttggaatgctgtatccaccatagcctttgat |
11496299 |
T |
|
| Q |
408 |
ggtgagacttttcaaatttgttgagggtcgcaaattttcaagtacagccctttgaacttgtgaatctgaaaaagtactaccacactcccattctaaagct |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11496300 |
ggtgagacttttcaaatttgttgagggtcgcaaattttcaagtacagccctttgaacttgtgaatctgaaaaagtactaccacactcccattctaaagct |
11496399 |
T |
|
| Q |
508 |
aacttgtctattcgttctttcatcttcaaattggcttgaaaagcttcagaggggtcattaacattttgtagttgtgagattgaaagttttccatgtaggt |
607 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11496400 |
aacttgtctatttgttctttcatcttcaaattggcttgaaaagcttcagaggggtcattaacattttgtagttgtgagattgaaagttttccatgtaggt |
11496499 |
T |
|
| Q |
608 |
ggggaaattttcctagttcggctaccatcaatccaccattacgtttactg |
657 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11496500 |
ggggaaattttcctagttcggctaccatcaatccaccattacgtttactg |
11496549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 11 - 653
Target Start/End: Complemental strand, 2921354 - 2920712
Alignment:
| Q |
11 |
ctcttaactcaagttcagttaaggaaggaagttggtcaggtatgtctcct---ctcagtttcgggcacttacttagtaacagactttttagactaggaaa |
107 |
Q |
| |
|
|||||||||| | || || ||||||||||| || |||| ||||| |||| ||||||||||||||| |||||||| ||| | ||||||||||| |||| |
|
|
| T |
2921354 |
ctcttaactccattttagataaggaaggaaatttgtcaattatgtttcctacactcagtttcgggcacctacttagtgacaaagtttttagactaagaaa |
2921255 |
T |
|
| Q |
108 |
atttgtcgttgtacctccaatcaagttccattcctcccattctggcatatcctcaaagtgtagagtctccaaggagggaaatggttgaaatgaaggagaa |
207 |
Q |
| |
|
||||| | ||||||||||||||||| | ||||||||| ||| ||| |||||||||| | || |||||||||||||||||||||||||||||| || |
|
|
| T |
2921254 |
ctttgtattcgtacctccaatcaagtttcgttcctcccactcttgcacatcctcaaagggaaggatctccaaggagggaaatggttgaaatgaag---aa |
2921158 |
T |
|
| Q |
208 |
ccatcacttccgtagaactctgtgctaacactctttattgaaagcatcgaatcaataatgagttctttcaaatttcccaattgtccaaggggtggaagcc |
307 |
Q |
| |
|
|||||||||| |||||||| || | || | || ||| ||||| ||||| ||||||||||||| ||| | |||||| || || |||||||||| |
|
|
| T |
2921157 |
acatcacttccatagaactcagtaccaattgcttgtactgattgcatctcttcaattatgagttctttcagattactcaattgaccgagcggtggaagcc |
2921058 |
T |
|
| Q |
308 |
atatacacttgtcaaaattcgagatccttaaatacaccatgttgccaaataaaaaatcacccaaccaatttggagtgctgtatccaccatagcctttgat |
407 |
Q |
| |
|
||| ||| || ||| |||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
2921057 |
ataaacaattatcacaatttgagatccttaaatacaccatgttgctaaatgaaaaatcacccaaccaatttggaaagctgattccaccatagcctttgat |
2920958 |
T |
|
| Q |
408 |
ggtgagacttttcaaatttgttgagggtcgcaaattttcaagtacagccctttgaacttgtgaatctgaaaaagtactaccacactcccattctaaagct |
507 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| |||||||||| | | |||||||| ||| || ||||||||||||||||| ||||||||||||| | |
|
|
| T |
2920957 |
ggtgagacttttcaaatttgttgaaggttgcaaatgttcaagtacaacacattgaacttctgattcagaaaaagtactaccacagtcccattctaaagtt |
2920858 |
T |
|
| Q |
508 |
aacttgtctattcgttctttcatcttcaaattggcttgaaaagcttcagaggggtcattaacattttgtagttgtgagattgaaagttttccatgtaggt |
607 |
Q |
| |
|
|| | || ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
2920857 |
aagtcgtgtattctctctttcatcttcaaattggcttgaaaagcttcagaggggtccttaacattttgtagttgtgagatggaaatttttccatttaggt |
2920758 |
T |
|
| Q |
608 |
ggggaaattttcctagttcggctaccatcaatccaccattacgttt |
653 |
Q |
| |
|
|||||||||||||||| || || ||| |||||||||||||| |||| |
|
|
| T |
2920757 |
ggggaaattttcctagctctgcaaccttcaatccaccattatgttt |
2920712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 11 - 645
Target Start/End: Complemental strand, 5967642 - 5967008
Alignment:
| Q |
11 |
ctcttaactcaagttcagttaaggaaggaagttggtcaggtatgtctcct---ctcagtttcgggcacttacttagtaacagactttttagactaggaaa |
107 |
Q |
| |
|
|||| |||||| |||||||||| ||||||| || ||||||||||| |||| |||||||| || |||||||||||| ||| | |||||||||||||||| |
|
|
| T |
5967642 |
ctctcaactcaggttcagttaaagaaggaaatttgtcaggtatgtttcctaatctcagttttggacacttacttagtgacaaagtttttagactaggaaa |
5967543 |
T |
|
| Q |
108 |
atttgtcgttgtacctccaatcaagttccattcctcccattctggcatatcctcaaagtgtagagtctccaaggagggaaatggttgaaatgaaggagaa |
207 |
Q |
| |
|
|| | | |||||||||||||||||| || ||||| ||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5967542 |
cttatccat---acctccaatcaagttccactcttcccactcttgcatattctcaaaatgtagagtctccaaggagggaaatggttgaaatgaaggagaa |
5967446 |
T |
|
| Q |
208 |
ccatcacttccgtagaactctgtgctaacactctttattgaaagcatcgaatcaataatgagttctttcaaatttcccaattgtccaaggggtggaagcc |
307 |
Q |
| |
|
| ||||||||| |||||||| || | || ||| ||| || ||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
5967445 |
ctatcacttccatagaactcagtaccaattatctgtatggattgcatcccttcaataatgagttctttcagattacccaattgtccaaggggtggaagcc |
5967346 |
T |
|
| Q |
308 |
atatacacttgtcaaaattcgagatccttaaatacaccatgttgccaaataaaaaatcacccaaccaatttggagtgctgtatccaccatagcctttgat |
407 |
Q |
| |
|
||| ||| | || ||||||||||||||||||||| ||||||| |||||| ||||||| |||||||| ||| | || ||| |||||||||||||| |
|
|
| T |
5967345 |
ataaacaatcaccacaattcgagatccttaaatacatcatgttggtaaataacgaatcacctaaccaattcggaaagttgattcccccatagcctttgat |
5967246 |
T |
|
| Q |
408 |
ggtgagacttttcaaatttgttgagggtcgcaaattttcaagtacagccctttgaacttgtgaatctgaaaaagtactaccacactcccattctaaagct |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| | || |||| ||||||||||||| ||||||||||||| ||||||||||| || |
|
|
| T |
5967245 |
ggtgagacttttcaaatttgttgagggtcgcaaatgttcaagtacaacactctgaatttgtgaatctgaacaagtactaccacaagcccattctaaaact |
5967146 |
T |
|
| Q |
508 |
aacttgtctattcgttctttcatcttcaaattggcttgaaaagcttcagaggggtcattaacattttgtagttgtgagattgaaagttttccatgtaggt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||||| | |||| ||| |||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
5967145 |
aacttgtctattcgttctttcatcttcatattggcttgaactgcttcaaaagggttattgacattttgtagttgtgagatggaaagttttccatttagaa |
5967046 |
T |
|
| Q |
608 |
ggggaaattttcctagttcggctaccatcaatccacca |
645 |
Q |
| |
|
| ||| | |||||||| || | ||||||||||||||| |
|
|
| T |
5967045 |
gaggatactttcctagctctccaaccatcaatccacca |
5967008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 184 - 647
Target Start/End: Original strand, 11489601 - 11490063
Alignment:
| Q |
184 |
ggaaatggttgaaatgaaggagaaccatcacttccgtagaactctgtgctaacactctttattgaaagcatcgaatcaataatgagttctttcaaatttc |
283 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||||| || | || ||| || ||| ||||| ||||||||||| | ||||| ||| | |
|
|
| T |
11489601 |
ggaaatggttgaaataaaggagaaccatcacttccatagaactcagtaccaattgtctgtactgattgcatcccttcaataatgaggtttttcagattac |
11489700 |
T |
|
| Q |
284 |
ccaattgtccaaggggtggaagccatatacacttgtcaaaattcgagatccttaaatacaccatgttgccaaataaaaaatcacccaaccaatttggagt |
383 |
Q |
| |
|
|||||| |||||||||||||||||||| ||| | |||| |||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
11489701 |
ccaattttccaaggggtggaagccataaacaatcgtcacaattcgagatccttaagtacaccatgttgctaaataaaaaatcacccatccaatttggaaa |
11489800 |
T |
|
| Q |
384 |
gctgtatccaccatagcctttgatggtgagacttttcaaatttgttgagggtcgcaaattttcaagtacagccctttgaacttgtgaatctgaaaaagta |
483 |
Q |
| |
|
| ||| ||||| |||||||| |||| ||||||||||||||||||||| ||| |||||| |||||||||| | |||||| ||||||||||| ||||||| |
|
|
| T |
11489801 |
gttgtctccacagtagccttttatggcgagacttttcaaatttgttgaaggttgcaaatgttcaagtacaacactttgagtttgtgaatctggaaaagta |
11489900 |
T |
|
| Q |
484 |
ctaccacactcccattctaaagctaacttgtctattcgttctttcatcttcaaattggcttgaaaagcttcagaggggtcattaacattttgtagttgtg |
583 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||||||| | ||||||||| |||||| |||||||||||||||||||||| |||| |
|
|
| T |
11489901 |
ctaccacaatcccattctaaagctaactcttctattcgttctttcatcttaatcttggcttgatctgcttcaaaggggtcattaacattttgtagctgtg |
11490000 |
T |
|
| Q |
584 |
agattgaaagttttccatgtaggtggggaaattttcctagttcggctaccatcaatccaccatt |
647 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| || || |||||| |||||||| |||| |
|
|
| T |
11490001 |
agatagaaagttttccatgtaggtggggaaattttcc-agctccgctaccttcaatccatcatt |
11490063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 390 - 620
Target Start/End: Original strand, 7489719 - 7489949
Alignment:
| Q |
390 |
tccaccatagcctttgatggtgagacttttcaaatttgttgagggtcgcaaattttcaagtacagccctttgaacttgtgaatctgaaaaagtactacca |
489 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||| ||||||||||||| |||||||||| | ||||||| || ||| | |||||||||||| ||| |
|
|
| T |
7489719 |
tccaccatagccttcgatggtgagacttttcaaacttgtcgagggtcgcaaatattcaagtacaacactttgaatttatgagtttgaaaaagtactgcca |
7489818 |
T |
|
| Q |
490 |
cactcccattctaaagctaacttgtctattcgttctttcatcttcaaattggcttgaaaagcttcagaggggtcattaacattttgtagttgtgagattg |
589 |
Q |
| |
|
|| ||||||| ||||||||||| |||||| ||||||||||||||| ||||||||||||| ||||| ||||| ||||||||||||||| ||||||| | |
|
|
| T |
7489819 |
cagtcccattttaaagctaactcatctatttgttctttcatcttcatattggcttgaaaaacttcaaaggggctattaacattttgtagcagtgagatgg |
7489918 |
T |
|
| Q |
590 |
aaagttttccatgtaggtggggaaattttcc |
620 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |
|
|
| T |
7489919 |
aaagttttccctgtaggtggggaaattttcc |
7489949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 93 - 207
Target Start/End: Original strand, 910007 - 910121
Alignment:
| Q |
93 |
ttttagactaggaaaatttgtcgttgtacctccaatcaagttccattcctcccattctggcatatcctcaaagtgtagagtctccaaggagggaaatggt |
192 |
Q |
| |
|
||||||||||||||| | | | |||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| |||| ||||| ||||||||| |
|
|
| T |
910007 |
ttttagactaggaaactgtatagttgtacctccaatcaagttccattcctcccattctggcatatccttaaattctagcctctctaaggaaggaaatggt |
910106 |
T |
|
| Q |
193 |
tgaaatgaaggagaa |
207 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
910107 |
tgaaatgaaggagaa |
910121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 81 - 472
Target Start/End: Complemental strand, 4131703 - 4131317
Alignment:
| Q |
81 |
tagtaacagactttttagactaggaaaatttgtcgttgtacctccaatcaagttccattcctcccattctggcatatcctcaaagtgtagagtctccaag |
180 |
Q |
| |
|
|||| |||||| |||||||| |||||| | || ||||||||||||||||| ||||| || ||||| ||| |||| ||||| | ||| ||||||||| |
|
|
| T |
4131703 |
tagtgacagacgttttagacgaggaaactctgcagttgtacctccaatcaacttccaatcttcccactctagcattgtatcaaactctagtgtctccaag |
4131604 |
T |
|
| Q |
181 |
gagggaaatggttgaaatgaaggagaaccatcacttccgtagaactctgtgctaacactctttattgaaagcatcgaatcaataatgagttctttcaaat |
280 |
Q |
| |
|
||| |||||||||||| ||| ||||| || |||||| |||||| || | || ||||||||||| |||| ||||| ||| |||||| || |
|
|
| T |
4131603 |
aaggaaaatggttgaaacgaatgagaa--at-acttcccgtgaactcggtaccaatcctctttattgatttcatctcgctaataaagag--ctttcagat |
4131509 |
T |
|
| Q |
281 |
ttcccaattgtccaaggggtggaagccatatacacttgtcaaaattcgagatccttaaatacaccatgttgccaaataaaaaatcacccaaccaatttgg |
380 |
Q |
| |
|
| || |||||||| |||||||| ||| | ||| || ||| ||| ||||| || ||| |||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
4131508 |
tacctaattgtccgaggggtggcagcaccaaacaattttcacaatgtgagattctcaaacacaccatgttgccaaataaagaactacccaaccaatttgg |
4131409 |
T |
|
| Q |
381 |
agtgctgtatccaccatagcctttgatggtgagacttttcaaatttgttgagggtcgcaaattttcaagtacagccctttgaacttgtgaat |
472 |
Q |
| |
|
| | ||| |||||||||||| |||||||||||||| ||||||||||| || || |||| | |||||||||| | ||||| | |||||||| |
|
|
| T |
4131408 |
aaagttgtttccaccatagccattgatggtgagactcttcaaatttgtcgatggctgcaattgttcaagtacaccactttgtatttgtgaat |
4131317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 95 - 227
Target Start/End: Original strand, 4090399 - 4090531
Alignment:
| Q |
95 |
ttagactaggaaaatttgtcgttgtacctccaatcaagttccattcctcccattctggcatatcctcaaagtgtagagtctccaaggagggaaatggttg |
194 |
Q |
| |
|
||||||||||||| | |||| |||||||||||||| |||||||||||||| ||| ||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
4090399 |
ttagactaggaaactctgtcaatgtacctccaatcagtttccattcctcccactcttgcatatcctcaaacctcagagtctccaaggagagaaatggttg |
4090498 |
T |
|
| Q |
195 |
aaatgaaggagaaccatcacttccgtagaactc |
227 |
Q |
| |
|
|| ||||||||| | |||||| |||||||| |
|
|
| T |
4090499 |
aatcaaaggagaactactacttccatagaactc |
4090531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 341 - 440
Target Start/End: Original strand, 4078769 - 4078868
Alignment:
| Q |
341 |
acaccatgttgccaaataaaaaatcacccaaccaatttggagtgctgtatccaccatagcctttgatggtgagacttttcaaatttgttgagggtcgcaa |
440 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| ||||| | ||| |||||||||||| ||||||||||| | |||||||||||||| || ||||| |
|
|
| T |
4078769 |
acaccatgttgccaaataaagaaccacccaaccaacttggaaagttgtttccaccatagccagtgatggtgagattcttcaaatttgttgatggacgcaa |
4078868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 228
Target Start/End: Original strand, 7489528 - 7489635
Alignment:
| Q |
121 |
cctccaatcaagttccattcctcccattctggcatatcctcaaagtgtagagtctccaaggagggaaatggttgaaatgaaggagaaccatcacttccgt |
220 |
Q |
| |
|
||||| |||| | |||| |||||||||||||||||||||| ||| |||||||||||||||| | |||| ||||||||||| || ||| || | |||| | |
|
|
| T |
7489528 |
cctcctatcatgctccactcctcccattctggcatatccttgaagcgtagagtctccaaggaagaaaatagttgaaatgaacgaaaactattatttccat |
7489627 |
T |
|
| Q |
221 |
agaactct |
228 |
Q |
| |
|
|||||||| |
|
|
| T |
7489628 |
agaactct |
7489635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 117 - 227
Target Start/End: Original strand, 4078300 - 4078410
Alignment:
| Q |
117 |
tgtacctccaatcaagttccattcctcccattctggcatatcctcaaagtgtagagtctccaaggagggaaatggttgaaatgaaggagaaccatcactt |
216 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||| ||||| || ||| |||||||||||||||||| ||||||||||||| | |||||| || |||| |
|
|
| T |
4078300 |
tgtacctccaattagcttccattcctcccactcttgcataccccaaaactgtagagtctccaaggagagaaatggttgaaacaatggagaatcactactt |
4078399 |
T |
|
| Q |
217 |
ccgtagaactc |
227 |
Q |
| |
|
|| |||||||| |
|
|
| T |
4078400 |
ccatagaactc |
4078410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 331 - 477
Target Start/End: Original strand, 4090881 - 4091027
Alignment:
| Q |
331 |
atccttaaatacaccatgttgccaaataaaaaatcacccaaccaatttggagtgctgtatccaccatagcctttgatggtgagacttttcaaatttgttg |
430 |
Q |
| |
|
||||| |||||||| |||||| |||||||| || |||||||||||||||| ||||| |||||||||||| |||||| ||||| ||||||||||| | |
|
|
| T |
4090881 |
atcctcaaatacactatgttgtcaaataaagaacaacccaaccaatttggaaagctgtttccaccatagccaaagatggtaagactcttcaaatttgtcg |
4090980 |
T |
|
| Q |
431 |
agggtcgcaaattttcaagtacagccctttgaacttgtgaatctgaa |
477 |
Q |
| |
|
| || ||||| | ||||| || || ||||| | |||||||| |||| |
|
|
| T |
4090981 |
acggacgcaactgttcaaacacggcactttgtatttgtgaatttgaa |
4091027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 337 - 427
Target Start/End: Original strand, 4113629 - 4113719
Alignment:
| Q |
337 |
aaatacaccatgttgccaaataaaaaatcacccaaccaatttggagtgctgtatccaccatagcctttgatggtgagacttttcaaatttg |
427 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||| | ||| |||||||||||| ||||||| || | |||||||||| |
|
|
| T |
4113629 |
aaatacaccatgttgccaaataaagaaccacccaaccaatttggaaagttgtttccaccatagccaatgatggttagtttcttcaaatttg |
4113719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 197
Target Start/End: Original strand, 3911829 - 3911908
Alignment:
| Q |
118 |
gtacctccaatcaagttccattcctcccattctggcatatcctcaaagtgtagagtctccaaggagggaaatggttgaaa |
197 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||| || | | | ||||||||||||||||||||||| |
|
|
| T |
3911829 |
gtacctccaatcatgttccattccttccattctggcatatcctcgaaacacaaaatttccaaggagggaaatggttgaaa |
3911908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 532 - 605
Target Start/End: Complemental strand, 3886743 - 3886670
Alignment:
| Q |
532 |
ttcaaattggcttgaaaagcttcagaggggtcattaacattttgtagttgtgagattgaaagttttccatgtag |
605 |
Q |
| |
|
|||||||||||| ||||||||||| |||| ||| ||||||||||||||| ||| || |||||||| || ||||| |
|
|
| T |
3886743 |
ttcaaattggctcgaaaagcttcaaagggatcagtaacattttgtagttttgaaatggaaagtttaccttgtag |
3886670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 4105772 - 4105852
Alignment:
| Q |
117 |
tgtacctccaatcaagttccattcctcccattctggcatatcctcaaagtgtagagtctccaaggagggaaatggttgaaa |
197 |
Q |
| |
|
|||||||||||| | ||||| |||||||| ||| |||||||| |||| || ||||||||||||||| |||||||||||| |
|
|
| T |
4105772 |
tgtacctccaattagcttccactcctcccactcttgcatatccccaaactgcagagtctccaaggagataaatggttgaaa |
4105852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 103 - 158
Target Start/End: Complemental strand, 3887172 - 3887117
Alignment:
| Q |
103 |
ggaaaatttgtcgttgtacctccaatcaagttccattcctcccattctggcatatc |
158 |
Q |
| |
|
||||||| ||| |||||| |||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
3887172 |
ggaaaatctgttgttgtatctccaatcaagttccagtcctcccactctggcatatc |
3887117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 341 - 428
Target Start/End: Original strand, 4059160 - 4059247
Alignment:
| Q |
341 |
acaccatgttgccaaataaaaaatcacccaaccaatttggagtgctgtatccaccatagcctttgatggtgagacttttcaaatttgt |
428 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| ||||| | ||| |||||||||||| ||| |||||| | ||||||||||| |
|
|
| T |
4059160 |
acaccatgttgccaaataaagaaccacccaaccaacttggaaagttgtttccaccatagccagagatagtgagattcttcaaatttgt |
4059247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 207
Target Start/End: Original strand, 4058670 - 4058780
Alignment:
| Q |
97 |
agactaggaaaatttgtcgttgtacctccaatcaagttccattcctcccattctggcatatcctcaaagtgtagagtctccaaggagggaaatggttgaa |
196 |
Q |
| |
|
||||||||||| | || | |||||||||||| | |||||||||||||| ||| ||||| | |||| |||||||||||||||| |||||||||||| |
|
|
| T |
4058670 |
agactaggaaactctgcagatgtacctccaattagcttccattcctcccactctttcatatacctaaaggttagagtctccaaggagagaaatggttgaa |
4058769 |
T |
|
| Q |
197 |
atgaaggagaa |
207 |
Q |
| |
|
| |||||||| |
|
|
| T |
4058770 |
acaaaggagaa |
4058780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 207
Target Start/End: Original strand, 4122493 - 4122583
Alignment:
| Q |
117 |
tgtacctccaatcaagttccattcctcccattctggcatatcctcaaagtgtagagtctccaaggagggaaatggttgaaatgaaggagaa |
207 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||| ||||||| ||| |||| ||||||||| ||| ||||||||||||| |||||||| |
|
|
| T |
4122493 |
tgtacctccaattagcttccattcctcccactcttgcatatctctaaactgtaaagtctccaaagagagaaatggttgaaacaaaggagaa |
4122583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 525 - 620
Target Start/End: Original strand, 910442 - 910537
Alignment:
| Q |
525 |
tttcatcttcaaattggcttgaaaagcttcagaggggtcattaacattttgtagttgtgagattgaaagttttccatgtaggtggggaaattttcc |
620 |
Q |
| |
|
||||||| ||||||| ||| ||||||| | |||||| ||| |||||||||| || | |||||| |||| ||||||||||| | ||||||||||| |
|
|
| T |
910442 |
tttcatcatcaaatttgctcgaaaagcattagagggctcaataacattttgaagatttgagatgcaaagatttccatgtagatcaggaaattttcc |
910537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 619
Target Start/End: Original strand, 3912230 - 3912327
Alignment:
| Q |
522 |
ttctttcatcttcaaattggcttgaaaagcttcagaggggtcattaacattttgtagttgtgagattgaaagttttccatgtaggtggggaaattttc |
619 |
Q |
| |
|
||||||| ||| ||| ||||| |||| ||| |||||| ||||| |||||||||||| | ||||||||| | ||| || ||||| || |||||||||| |
|
|
| T |
3912230 |
ttctttcttctccaagttggcatgaacagcatcagagaggtcagtaacattttgtaactttgagattgacaatttcccttgtagatgtggaaattttc |
3912327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 514; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 8 - 657
Target Start/End: Complemental strand, 17313568 - 17312919
Alignment:
| Q |
8 |
atcctcttaactcaagttcagttaaggaaggaagttggtcaggtatgtctcctctcagtttcgggcacttacttagtaacagactttttagactaggaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
17313568 |
atcctcttaactcaagttcagttaaggaaggaagtttgtcaggtatgtctcctctcagtttcgggcacttgcttagtaacaaactttttagactaggaaa |
17313469 |
T |
|
| Q |
108 |
atttgtcgttgtacctccaatcaagttccattcctcccattctggcatatcctcaaagtgtagagtctccaaggagggaaatggttgaaatgaaggagaa |
207 |
Q |
| |
|
|||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
17313468 |
atttgtagttgtacctccaatcatgttccactcctcccattctggcatatcctcaaagtgtagagtctccaaggagggaaatggttgaaaagaaggaggg |
17313369 |
T |
|
| Q |
208 |
ccatcacttccgtagaactctgtgctaacactctttattgaaagcatcgaatcaataatgagttctttcaaatttcccaattgtccaaggggtggaagcc |
307 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||| |
|
|
| T |
17313368 |
ttatcacttccgtagaactctgtaccaacactctttattgaaagcatcgaatcaataatgagttctttcaaattacccaattttccaagggatggaagcc |
17313269 |
T |
|
| Q |
308 |
atatacacttgtcaaaattcgagatccttaaatacaccatgttgccaaataaaaaatcacccaaccaatttggagtgctgtatccaccatagcctttgat |
407 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
17313268 |
atatacacttatcacaattcgagatccttaaatacaccatgttgccaaataaaaaatcacccaaccaatttggaatgctgaatccaccatagcctttgat |
17313169 |
T |
|
| Q |
408 |
ggtgagacttttcaaatttgttgagggtcgcaaattttcaagtacagccctttgaacttgtgaatctgaaaaagtactaccacactcccattctaaagct |
507 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
17313168 |
gatgagacttttcaaatttgttgagggtctcaaattttcaagtacaaccctttgaacttgtgaatctgaaaaagtactaccacaatcccattctaaagct |
17313069 |
T |
|
| Q |
508 |
aacttgtctattcgttctttcatcttcaaattggcttgaaaagcttcagaggggtcattaacattttgtagttgtgagattgaaagttttccatgtaggt |
607 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17313068 |
aacttgtctatccgttctttcatcttcaaattggcttgaaaagcttcagaggggtcagtaacattttgtagttgtgagatggaaagttttccatgtaggt |
17312969 |
T |
|
| Q |
608 |
ggggaaattttcctagttcggctaccatcaatccaccattacgtttactg |
657 |
Q |
| |
|
||| |||||||||||| ||||| | |||||||| |||||||||||||| |
|
|
| T |
17312968 |
gggtaaattttcctagctcggcaaagttcaatccatcattacgtttactg |
17312919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 97 - 207
Target Start/End: Complemental strand, 13935392 - 13935282
Alignment:
| Q |
97 |
agactaggaaaatttgtcgttgtacctccaatcaagttccattcctcccattctggcatatcctcaaagtgtagagtctccaaggagggaaatggttgaa |
196 |
Q |
| |
|
||||||||||| | ||| | |||||||||||| | |||||||||||||| ||| |||||||| ||| |||||||||||||||||| |||||||||||| |
|
|
| T |
13935392 |
agactaggaaactctgtagatgtacctccaattagcttccattcctcccactcttgcatatccctaaactgtagagtctccaaggagagaaatggttgaa |
13935293 |
T |
|
| Q |
197 |
atgaaggagaa |
207 |
Q |
| |
|
| |||||||| |
|
|
| T |
13935292 |
acaaaggagaa |
13935282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 341 - 428
Target Start/End: Complemental strand, 13934902 - 13934815
Alignment:
| Q |
341 |
acaccatgttgccaaataaaaaatcacccaaccaatttggagtgctgtatccaccatagcctttgatggtgagacttttcaaatttgt |
428 |
Q |
| |
|
|||||||||||| ||||||| || ||||||||||| ||||| | ||| |||||||||||| ||||||||||| | ||||||||||| |
|
|
| T |
13934902 |
acaccatgttgcaaaataaagaaccacccaaccaacttggaaagttgtttccaccatagccagtgatggtgagattcttcaaatttgt |
13934815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 14 - 653
Target Start/End: Complemental strand, 18389847 - 18389205
Alignment:
| Q |
14 |
ttaactcaagttcagttaag---gaaggaagttggtcaggtatgtctcctctcagtttcgggcacttacttagtaacagactttttagactaggaaaatt |
110 |
Q |
| |
|
|||||||||||| ||||||| |||||||||| ||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
18389847 |
ttaactcaagtttagttaagcaggaaggaagtttgtcaggtatatttcctctcagtttcgggcacttacttagtaacaaactttttagactaggaaactg |
18389748 |
T |
|
| Q |
111 |
tgtcgttgtacctccaatcaagttccattcctcccattctggcatatcctcaaagtgtagagtctccaaggagggaaatggttgaaatgaaggagaacca |
210 |
Q |
| |
|
|| || |||||| ||| || | |||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
18389747 |
cgtagtggtaccttcaaccatgctccactcctcccactctggcatatcctcaaagtgtagagtctccaatgagggaaatggttgaaatgaaggatgacca |
18389648 |
T |
|
| Q |
211 |
tcacttccgtagaactctgtgctaacactctttattgaaagcatcgaatcaataatgagttctttcaaatttcccaattgtccaaggggtggaagccata |
310 |
Q |
| |
|
||| |||| || |||||||| | |||||||||||| ||||||| ||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
18389647 |
tcatttccataaaactctgtaccaacactctttatggaaagcaacgaatcaataacgagttctttcaaattacccaattgtccaagggatggaagccata |
18389548 |
T |
|
| Q |
311 |
tacacttgtcaaaattcgagatccttaaatacaccatgttgccaaataaaaaatcacccaaccaatttggagtgctgtatccaccatagcctttgatggt |
410 |
Q |
| |
|
||| ||| || |||| ||||| |||||||||| |||||| ||||||| | ||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
18389547 |
gacaattgacacaatttgagattcttaaatacaacatgtttccaaatacattatcacccaaccaatttggaaagctggttccaccatagcctttgatggt |
18389448 |
T |
|
| Q |
411 |
gagacttttcaaatttgttgagggtcgcaaattttcaagtacagccctttgaacttgtgaatctgaaaaagtactaccacactcccattctaaagctaac |
510 |
Q |
| |
|
||||||||||||||||||||| ||| |||||| || ||||||||| || ||| ||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
18389447 |
gagacttttcaaatttgttgaaggttgcaaatgtttaagtacagcactatgagcttgtgaatctaaaaaagtactaccacaatcccattctaaagctaac |
18389348 |
T |
|
| Q |
511 |
ttgtctattcgttctttcatcttcaaattggcttgaaaagcttcagaggggtcattaacattttgtagttgtgagattgaaagttttccatgtaggtggg |
610 |
Q |
| |
|
| || ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| || | |
|
|
| T |
18389347 |
tcgtgtattcgttctttcgtattcaaattggcttgaaaagcttcagaggggtcattaacattttgtagttgcgagatgtaaagttttccatgtagatgag |
18389248 |
T |
|
| Q |
611 |
gaaattttcctagttcggctaccatcaatccaccattacgttt |
653 |
Q |
| |
|
||||||||||||| || || ||| |||||||||||||| |||| |
|
|
| T |
18389247 |
gaaattttcctagctctgcaaccttcaatccaccattatgttt |
18389205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 11 - 623
Target Start/End: Complemental strand, 16448608 - 16447996
Alignment:
| Q |
11 |
ctcttaactcaagttcagttaaggaaggaagttggtcaggtatgtctcct---ctcagtttcgggcacttacttagtaacagactttttagactaggaaa |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||| || || ||| |||| |||| || ||||| ||||||||||| | ||| | | |||||| ||||||||| |
|
|
| T |
16448608 |
ctctcaactcaagttcagttaaggaaggaaatttgttaggcatgtttcctacgctaagttttgggcacttactcaataataaagtttttaaactaggaaa |
16448509 |
T |
|
| Q |
108 |
atttgtcgttgtacctccaatcaagttccattcctcccattctggcatatcctcaaagtgtagagtctccaaggagggaaatggttgaaatgaaggagaa |
207 |
Q |
| |
|
||||| |||||||||||| |||||| |||||||||||| ||| |||||||||||||||||||||| |||||||||| |||||||||||||||| | |
|
|
| T |
16448508 |
ctttgttgttgtacctccattcaagtcccattcctcccactcttccatatcctcaaagtgtagagtcaccaaggaggggaatggttgaaatgaag---ac |
16448412 |
T |
|
| Q |
208 |
ccatcacttccgtagaactctgtgctaacactctttattgaaagcatcgaatcaataatgagttctttcaaatttcccaattgtccaaggggtggaagcc |
307 |
Q |
| |
|
| ||||||||| |||||||| || | || ||| |||||| ||||| | ||||||||| ||||| | ||| ||||| ||||||||||| ||||||| |
|
|
| T |
16448411 |
cgatcacttccatagaactcagtaccaattgtctgtattgattgcatccctttaataatgagctcttttagattacccaactgtccaaggggaggaagcc |
16448312 |
T |
|
| Q |
308 |
atatacacttgtcaaaattcgagatccttaaatacaccatgttgccaaataaaaaatcacccaaccaatttggagtgctgtatccaccatagcctttgat |
407 |
Q |
| |
|
||| ||| ||| ||||||||||||||||| ||| |||||||| |||||||| ||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
16448311 |
ataaacaagcatcacaattcgagatccttaaagacatcatgttgctaaataaaatatcacccaaccaatttggaaagctgattccaccatagcctttgat |
16448212 |
T |
|
| Q |
408 |
ggtgagacttttcaaatttgttgagggtcgcaaattttcaagtacagccctttgaacttgtgaatctgaaaaagtactaccacactcccattctaaagct |
507 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| | ||||| | || ||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
16448211 |
ggtgagacttttcaaatttgtcgagggtcgcaaattttcaagtacaacactttgtatttttgaatctgaaaaattactaccacaatcccattctaaagct |
16448112 |
T |
|
| Q |
508 |
aacttgtctattcgttctttcatcttcaaattggcttgaaaagcttcagaggggtcattaacattttgtagttgtgagattgaaagttttccatgtaggt |
607 |
Q |
| |
|
|||| |||||||| |||||||||| ||| ||| ||| || ||||||| | |||||||||||||||||||| |||||||||| ||||||||||||||| | |
|
|
| T |
16448111 |
aactcgtctattctttctttcatcatcatattagctagagaagcttccaatgggtcattaacattttgtagctgtgagattgcaagttttccatgtagtt |
16448012 |
T |
|
| Q |
608 |
ggggaaattttcctag |
623 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
16448011 |
ggggaaattttcctag |
16447996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 626
Target Start/End: Complemental strand, 5990352 - 5989737
Alignment:
| Q |
11 |
ctcttaactcaagttcagttaaggaaggaagttggtcaggtatgtctcct---ctcagtttcgggcacttacttagtaacagactttttagactaggaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||| |||| |||| |||||||||||||||||||||||| ||| | |||||| | |||||| |
|
|
| T |
5990352 |
ctcttaactcaagttcagttaaggaaggaaacttgtcagcaatgtttcctactctcagtttcgggcacttacttagtgacaaagtttttaaagaaggaaa |
5990253 |
T |
|
| Q |
108 |
atttgtcgttgtacctccaatcaagttccattcctcccattctggcatatcctcaaagtgtagagtctccaaggagggaaatggttgaaatgaaggagaa |
207 |
Q |
| |
|
| ||| || |||||| |||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||| ||||||||||||||||||| || |
|
|
| T |
5990252 |
ctctgtggtcgtaccttcaatcaagttccattcctcccactcttgcatatcctcaaagtgcagagtctccaaggatggaaatggttgaaatgaag---aa |
5990156 |
T |
|
| Q |
208 |
ccatcacttccgtagaactctgtgctaacactctttattgaaagcatcgaatcaataatgagttctttcaaatttcccaattgtccaaggggtggaagcc |
307 |
Q |
| |
|
| |||| | | |||||||| | || ||| || || ||||| ||||||||||||| ||||| ||| ||||||||||||||||| ||||||| |
|
|
| T |
5990155 |
acgtcacctgcatagaactcaacaccaattgtctctacggattgcatcccttcaataatgagttttttcagattacccaattgtccaagggggggaagcc |
5990056 |
T |
|
| Q |
308 |
atatacacttgtcaaaattcgagatccttaaatacaccatgttgccaaataaaaaatcacccaaccaatttggagtgctgtatccaccatagcctttgat |
407 |
Q |
| |
|
||| ||| | ||| || | |||||||||||||||||||| || | ||||||| ||||||| |||||||||| | |||| ||||||||| |||||||| |
|
|
| T |
5990055 |
ataaacaatgatcacaacttgagatccttaaatacaccatatttctaaataaagaatcacctaaccaatttgaaaagctgattccaccataccctttgat |
5989956 |
T |
|
| Q |
408 |
ggtgagacttttcaaatttgttgagggtcgcaaattttcaagtacagccctttgaacttgtgaatctgaaaaagtactaccacactcccattctaaagct |
507 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||| | ||||||| |||||||| |||| ||||||||| ||| | ||||||||||||| |
|
|
| T |
5989955 |
ggtgagatttttcaaatttgttgagggtcgcaaatgttcaagtacaacactttgaatttgtgaatttgaagaagtactacaacaattccattctaaagct |
5989856 |
T |
|
| Q |
508 |
aacttgtctattcgttctttcatcttcaaattggcttgaaaagcttcagaggggtcattaacattttgtagttgtgagattgaaagttttccatgtaggt |
607 |
Q |
| |
|
|||| ||||| | ||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||| | |||||||| ||||||||||||||||| | |
|
|
| T |
5989855 |
aactcgtctagttgttctttcatcttcatatttgcttgaaaagcttcaaaggggtcattaacattttgcatctgtgagatggaaagttttccatgtagat |
5989756 |
T |
|
| Q |
608 |
ggggaaattttcctagttc |
626 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
5989755 |
ggggaaactttcctagttc |
5989737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0603 (Bit Score: 220; Significance: 1e-120; HSPs: 1)
Name: scaffold0603
Description:
Target: scaffold0603; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 118 - 617
Target Start/End: Original strand, 3220 - 3719
Alignment:
| Q |
118 |
gtacctccaatcaagttccattcctcccattctggcatatcctcaaagtgtagagtctccaaggagggaaatggttgaaatgaaggagaaccatcacttc |
217 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||| |||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
3220 |
gtacctccaatcaagttccactcctcccactcttgcatattctcaaaatgtagagtctccaaggagggaaatggttgaaatgaagaagaacagtcacttc |
3319 |
T |
|
| Q |
218 |
cgtagaactctgtgctaacactctttattgaaagcatcgaatcaataatgagttctttcaaatttcccaattgtccaaggggtggaagccatatacactt |
317 |
Q |
| |
|
| |||||||| || | || ||| || ||| ||||| ||||||||||||| ||||| ||| |||||||| ||||| ||||||||||||| ||| | |
|
|
| T |
3320 |
catagaactcagtaccaattatctctactgattgcatctcttcaataatgagttttttcagattacccaattgcccaagaggtggaagccataaacaatc |
3419 |
T |
|
| Q |
318 |
gtcaaaattcgagatccttaaatacaccatgttgccaaataaaaaatcacccaaccaatttggagtgctgtatccaccatagcctttgatggtgagactt |
417 |
Q |
| |
|
| |||| ||||||||||||||||||||||||| |||||| ||||||| |||||||| ||| ||| ||||||||||||||||||||| |||||| |
|
|
| T |
3420 |
actacaatttgagatccttaaatacaccatgttgctaaataaggaatcaccaaaccaattcggaaagctaattccaccatagcctttgatggtaagactt |
3519 |
T |
|
| Q |
418 |
ttcaaatttgttgagggtcgcaaattttcaagtacagccctttgaacttgtgaatctgaaaaagtactaccacactcccattctaaagctaacttgtcta |
517 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||| | ||||||| ||||||| |||||||| ||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
3520 |
ttcaaatttgttgagggttgcaaatgttcaagtacaacactttgaatatgtgaatttgaaaaagcactaccacaatcccattctaaagataacttgtcta |
3619 |
T |
|
| Q |
518 |
ttcgttctttcatcttcaaattggcttgaaaagcttcagaggggtcattaacattttgtagttgtgagattgaaagttttccatgtaggtggggaaattt |
617 |
Q |
| |
|
| ||||||||||||||| ||||||||||| |||||| |||||||| | ||||||||||| ||||| || |||||||||||| |||||||||| |||| |
|
|
| T |
3620 |
tctgttctttcatcttcatattggcttgaactgcttcaaaggggtcactgacattttgtagctgtgatatgcaaagttttccatataggtggggatattt |
3719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 511 - 620
Target Start/End: Complemental strand, 20023 - 19914
Alignment:
| Q |
511 |
ttgtctattcgttctttcatcttcaaattggcttgaaaagcttcagaggggtcattaacattttgtagttgtgagattgaaagttttccatgtaggtggg |
610 |
Q |
| |
|
||||| ||| ||||||||||||||||||| |||| |||||| ||| |||||||| | | ||||||||| | |||||| ||||| ||||| | ||| || | |
|
|
| T |
20023 |
ttgtcaatttgttctttcatcttcaaatttgcttcaaaagcatcaaaggggtcagtgatattttgtagatttgagatggaaagatttccctttagatgcg |
19924 |
T |
|
| Q |
611 |
gaaattttcc |
620 |
Q |
| |
|
|||||||||| |
|
|
| T |
19923 |
gaaattttcc |
19914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 339 - 431
Target Start/End: Complemental strand, 20207 - 20115
Alignment:
| Q |
339 |
atacaccatgttgccaaataaaaaatcacccaaccaatttggagtgctgtatccaccatagcctttgatggtgagacttttcaaatttgttga |
431 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||| ||| ||| |||||| || ||||||||||||||| | |||||||||||||| |
|
|
| T |
20207 |
atacaccatgttgctaaataatgaatcacccaaccaattcggaaagcttgttccaccgtaacctttgatggtgagattcttcaaatttgttga |
20115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 20418 - 20342
Alignment:
| Q |
128 |
tcaagttccattcctcccattctggcatatcctcaaagtgtagagtctccaaggagggaaatggttgaaatgaagga |
204 |
Q |
| |
|
||||||||||||||||||| || |||| || ||||| | |||||||||||||| |||||||||||||| |||||| |
|
|
| T |
20418 |
tcaagttccattcctcccactcgagcatctcttcaaattccagagtctccaaggaaggaaatggttgaaacgaagga |
20342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 1515 - 1420
Alignment:
| Q |
103 |
ggaaaatttgtcgttgtacctccaatcaagttccattcctcccattctggcatatcctcaaagtgtagagtctccaaggagggaaatggttgaaat |
198 |
Q |
| |
|
||||||| ||| |||||| |||||||||||||||| |||||||| |||||||||||| ||| | | | || |||||||||||||||||||||| |
|
|
| T |
1515 |
ggaaaatctgttgttgtatctccaatcaagttccagtcctcccactctggcatatccctgaagcgcaaaacctgcaaggagggaaatggttgaaat |
1420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 197
Target Start/End: Original strand, 18661 - 18740
Alignment:
| Q |
118 |
gtacctccaatcaagttccattcctcccattctggcatatcctcaaagtgtagagtctccaaggagggaaatggttgaaa |
197 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||| || | | | ||||||||||||||||||||||| |
|
|
| T |
18661 |
gtacctccaatcatgttccattccttccattctggcatatcctcgaaacacaaaatttccaaggagggaaatggttgaaa |
18740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 532 - 605
Target Start/End: Complemental strand, 1086 - 1013
Alignment:
| Q |
532 |
ttcaaattggcttgaaaagcttcagaggggtcattaacattttgtagttgtgagattgaaagttttccatgtag |
605 |
Q |
| |
|
|||||||||||| ||||||||||| |||| ||| ||||||||||||||| ||| | |||||||| || ||||| |
|
|
| T |
1086 |
ttcaaattggctagaaaagcttcaaagggatcagtaacattttgtagttttgaaagggaaagtttaccttgtag |
1013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 619
Target Start/End: Original strand, 19062 - 19159
Alignment:
| Q |
522 |
ttctttcatcttcaaattggcttgaaaagcttcagaggggtcattaacattttgtagttgtgagattgaaagttttccatgtaggtggggaaattttc |
619 |
Q |
| |
|
||||||| ||| ||| ||||| |||| ||| |||||| ||||| |||||||||||| | ||||||||| | ||| || ||||| || |||||||||| |
|
|
| T |
19062 |
ttctttcttctccaagttggcatgaacagcatcagagaggtcagtaacattttgtaactttgagattgacaatttcccttgtagatgtggaaattttc |
19159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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