View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5524-Insertion-7 (Length: 387)
Name: NF5524-Insertion-7
Description: NF5524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5524-Insertion-7 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 313
Target Start/End: Complemental strand, 241706 - 241401
Alignment:
| Q |
8 |
cattaagcctaatagattccggaatctcatcataagccttcaatagcctcgcctcatccggcatatatttcaatatcacatcagccttatcatcctgata |
107 |
Q |
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| T |
241706 |
cattaagcctaatagattccggaatctcatcataagccttcaatagcctcgcctcatccggcatatatttcaatatcacatcagccttatcatcctgata |
241607 |
T |
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| Q |
108 |
atcacgtgatccaataagtatggtatctccgttagcaatccaaaccttcttgtgcatcttatcacggatatgacagagacgttttctgatgttgttatcg |
207 |
Q |
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| T |
241606 |
atcacgtaatccaataagtattatatctccgttagcaatccaaaccttcttgtgcatcttaccccggatatgacagagacgttttctgatgttgttctcg |
241507 |
T |
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| Q |
208 |
ttgtcgatgcaattcgcttccaaccgtccgtttccaagcatacgtgttacctgtgcgtattcttgaccgtcttctttgaagatcagttcccgtttctcat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
241506 |
ttgtcgatgcaattcgcttccaaccgtccgtttccaagcatacgtgttacctgtgcgtattcttgaccgtcttctttgaagatcagttcgcgtttctcat |
241407 |
T |
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| Q |
308 |
cgtcag |
313 |
Q |
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|||||| |
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| T |
241406 |
cgtcag |
241401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 58 - 188
Target Start/End: Original strand, 10520570 - 10520700
Alignment:
| Q |
58 |
gcctcatccggcatatatttcaatatcacatcagccttatcatcctgataatcacgtgatccaataagtatggtatctccgttagcaatccaaaccttct |
157 |
Q |
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| T |
10520570 |
gcctcatccggcatatacttcaagatcacatcagccttatcatcctgataatcacgcaacccaacaagaataatatccccagcagcaatccaaaccttct |
10520669 |
T |
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| Q |
158 |
tgtgcatcttatcacggatatgacagagacg |
188 |
Q |
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| T |
10520670 |
tgtgcatctttccacggatatgacagagacg |
10520700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 10520735 - 10520787
Alignment:
| Q |
235 |
ccgtttccaagcatacgtgttacctgtgcgtattcttgaccgtcttctttgaa |
287 |
Q |
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| T |
10520735 |
ccgtttccaagcatacgaagaacctgtgcgtattcttgaccatcttccttgaa |
10520787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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