View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5524-Insertion-8 (Length: 246)
Name: NF5524-Insertion-8
Description: NF5524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5524-Insertion-8 |
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| [»] scaffold0280 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: scaffold0280 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 246
Target Start/End: Original strand, 14928 - 15166
Alignment:
| Q |
8 |
cttggaatggacaaatattcagtttggttcctgaaatgaggtcaaactatgcctttaatttcagtttcgtgactaatgagaatgagagctacttcacata |
107 |
Q |
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| T |
14928 |
cttggaatggacaaatattcagtttggttcctgaaatgaggtcaaactatgcctttaatttcagtttcgtgactaatgagaatgagagctacttcacata |
15027 |
T |
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| Q |
108 |
ttctatgtataacaaagatgatatatctcgtttctggatggatatctcggggcagatcaagcaacttacctggctggaaagtactcagcagtggaatttg |
207 |
Q |
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| T |
15028 |
ttctatgtacaacaatgatactatatctcgtttcgtgatggatatctcggggcagatcaagcaacttacctggctggaaagtactcagcagtggaatttg |
15127 |
T |
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| Q |
208 |
ttttggtcacagccaagaggacagtgtgaggtttatgct |
246 |
Q |
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| T |
15128 |
ttttggtcacagccaagaggacagtgtgaggtttatgct |
15166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 246
Target Start/End: Original strand, 37764734 - 37764972
Alignment:
| Q |
8 |
cttggaatggacaaatattcagtttggttcctgaaatgaggtcaaactatgcctttaatttcagtttcgtgactaatgagaatgagagctacttcacata |
107 |
Q |
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| T |
37764734 |
cttggaatggacatatttttagtttggttcctgagatgaggtcaaattatatcttcaatttttcgtttgtgtcgaatgataatgaaagctacttcaccta |
37764833 |
T |
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| Q |
108 |
ttctatgtataacaaagatgatatatctcgtttctggatggatatctcggggcagatcaagcaacttacctggctggaaagtactcagcagtggaatttg |
207 |
Q |
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| T |
37764834 |
ttccatgtataacccttcgattatatcgcggtttgtgatggatatctcagggcagattaagcaactaacatggttggaaggtatcaatgagtggaacttg |
37764933 |
T |
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| Q |
208 |
ttttggtcacagccaagaggacagtgtgaggtttatgct |
246 |
Q |
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| T |
37764934 |
ttttgggcgcagccaagacaacattgtgaggcttatgct |
37764972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 246
Target Start/End: Complemental strand, 37800882 - 37800780
Alignment:
| Q |
144 |
gatggatatctcggggcagatcaagcaacttacctggctggaaagtactcagcagtggaatttgttttggtcacagccaagaggacagtgtgaggtttat |
243 |
Q |
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| T |
37800882 |
gatggatatctcaggacagatcaagcaaataacatggttggatagcacccaacagtggtacctcttttggtcccagccaagagtacaatgtgatgtttat |
37800783 |
T |
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| Q |
244 |
gct |
246 |
Q |
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||| |
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| T |
37800782 |
gct |
37800780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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