View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5524-Insertion-9 (Length: 180)
Name: NF5524-Insertion-9
Description: NF5524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5524-Insertion-9 |
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| [»] chr2 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 7e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 7e-91
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 3776430 - 3776258
Alignment:
| Q |
8 |
cacacaaccttaacagctgtgcaatgcaatgttggaagcttctctaataaatcaatagtcaacatagatgcctttgattttggctttgttattatcctct |
107 |
Q |
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| T |
3776430 |
cacacaaccttaacagcagtgcaatgcaatgttggaagcttctctaataaatcaatagtcaacatagatgcctttgattttggctttgttattatcctct |
3776331 |
T |
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| Q |
108 |
cagaatttcccattggaagaggagttgttgaagtgttcctttcacatggacctaaccatttagcttgcatgta |
180 |
Q |
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| T |
3776330 |
cagaatttcccattggaagaggagttgttgaagtgttcctttcacatggacctaaccatttagcttgcatgta |
3776258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 19 - 180
Target Start/End: Complemental strand, 3808131 - 3807964
Alignment:
| Q |
19 |
aacagctgtgcaatgcaatgttggaagcttctctaataaatcaatagtcaacatagatgcctttgattttggctttgttattatcctctcagaa---ttt |
115 |
Q |
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| T |
3808131 |
aacagctgggcaatgcaatgttggaagcttatcaaataattcaatagtcaacatagatacctttgatttttgctttgttatgatcctctcagaaaatgat |
3808032 |
T |
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| Q |
116 |
cccattggaagaggag---ttgttgaagtgttcctttcacatggacctaaccatttagcttgcatgta |
180 |
Q |
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| T |
3808031 |
ccaatagaaagtggagactttgttgaagggtacctttcacatggacctaaccatttagcttccatgta |
3807964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 47 - 180
Target Start/End: Original strand, 35364923 - 35365059
Alignment:
| Q |
47 |
ttctctaataaatcaatagtcaacatagatgcctttgattttggctttg--ttattat-cctctcagaatttcccattggaagaggagttgttgaagtgt |
143 |
Q |
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| T |
35364923 |
ttctctaataaatcaatggttaacattgatgcctttggcttctgctttggattaatattcctctcagaatatcccaatgaaagtgaatttgttgaagtgt |
35365022 |
T |
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| Q |
144 |
tcctttcacatggacctaaccatttagcttgcatgta |
180 |
Q |
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| T |
35365023 |
tccttttaaatggacctaaccatttagcttgcatgta |
35365059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 35373097 - 35373175
Alignment:
| Q |
102 |
tcctctcagaatttcccattggaagaggagttgttgaagtgttcctttcacatggacctaaccatttagcttgcatgta |
180 |
Q |
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| T |
35373097 |
tcctctcagaatatcccaatgaaagtgaatttgttgaagtgttccttttaaatggacctaaccatttagcttgcatgta |
35373175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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