View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5524_high_4 (Length: 243)

Name: NF5524_high_4
Description: NF5524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5524_high_4
NF5524_high_4
[»] chr3 (5 HSPs)
chr3 (12-243)||(34870098-34870329)
chr3 (12-243)||(34874615-34874848)
chr3 (160-243)||(34730752-34730835)
chr3 (156-204)||(28389374-28389422)
chr3 (156-204)||(41242252-41242300)
[»] chr8 (1 HSPs)
chr8 (156-204)||(25267103-25267151)
[»] chr6 (2 HSPs)
chr6 (156-204)||(9456282-9456330)
chr6 (152-200)||(12185784-12185832)
[»] chr1 (2 HSPs)
chr1 (153-204)||(46298524-46298575)
chr1 (167-204)||(25808557-25808594)
[»] chr7 (1 HSPs)
chr7 (158-204)||(24211399-24211445)
[»] scaffold0192 (1 HSPs)
scaffold0192 (157-204)||(13378-13425)


Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 243
Target Start/End: Complemental strand, 34870329 - 34870098
Alignment:
Q  12 tcatcaggctttttggatcgctcacacgtccctcaaccaatcggtcggctttttaagtgtgtaaacttcgatcggatagactttatgagaaaatgggagt 111  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  34870329 tcatcaggctttttggattgctcacacgtccctcaaccaatcggtcgactttttaagtgtgtaaacttcgatcgggtagactttatcagaaaatgggagt 34870230  T
Q  112 attaactagtatttgttgtttctttcttcgaaaaatcaaattgtcctcaaggcataagttaagaaaccaaagataaaaatattttgttggaaactatcat 211  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  34870229 attaactagtatctgttgtttctttcttcgaaaaatcaaattgtcctcaaggcataagttaagaaaccaaagataaaaatattttgttggaaattgtcat 34870130  T
Q  212 ctaatagatacaatattttttccagtctcgat 243  Q
     | |||||||| ||||||||||||||||||||    
T  34870129 atcatagataccatattttttccagtctcgat 34870098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 12 - 243
Target Start/End: Original strand, 34874615 - 34874848
Alignment:
Q  12 tcatcaggctttttggatcgctcacacgtccctcaaccaatcggtcggctttttaagtgtgtaaacttcgatcggatagactttatgagaaaatgggagt 111  Q
    ||||||| |||||||||| ||||| |||||| ||||| ||||||||| | ||||||||||||||| ||||||||| |||||||||| |||||||| ||||    
T  34874615 tcatcagactttttggattgctcatacgtccttcaactaatcggtcgacattttaagtgtgtaaatttcgatcgggtagactttatcagaaaatgtgagt 34874714  T
Q  112 attaactagtatttgttgtttctttcttcgaaaaatcaaattgt--cctcaaggcataagttaagaaaccaaagataaaaatattttgttggaaactatc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||| | ||    
T  34874715 attaactagtatttgttgtttctttcttcgaaaaatcaaattgtgccctcaaggcataagttaagtaaccaaagataaaaatattttgttggaaattgtc 34874814  T
Q  210 atctaatagatacaatattttttccagtctcgat 243  Q
    |||| |||||||| | ||||||||||||||||||    
T  34874815 atctcatagataccacattttttccagtctcgat 34874848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 34730835 - 34730752
Alignment:
Q  160 aaggcataagttaagaaaccaaagataaaaatattttgttggaaactatcatctaatagatacaatattttttccagtctcgat 243  Q
    |||| |||||||||||||| ||||||||||||||||||||||||| | ||||||  ||||||| | |||||||||| |||||||    
T  34730835 aaggaataagttaagaaactaaagataaaaatattttgttggaaattgtcatctcgtagataccacattttttccactctcgat 34730752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 28389374 - 28389422
Alignment:
Q  156 cctcaaggcataagttaagaaaccaaagataaaaatattttgttggaaa 204  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28389374 cctcaaggcacaagttaagaaaccaaagataaaaatattttgttggaaa 28389422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 41242300 - 41242252
Alignment:
Q  156 cctcaaggcataagttaagaaaccaaagataaaaatattttgttggaaa 204  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||    
T  41242300 cctcaaggcacaagttaagaaaccaaagataaaaacattttgttggaaa 41242252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 25267151 - 25267103
Alignment:
Q  156 cctcaaggcataagttaagaaaccaaagataaaaatattttgttggaaa 204  Q
    |||||| |||||||||||||||||||||||| ||| |||||||||||||    
T  25267151 cctcaaagcataagttaagaaaccaaagatagaaacattttgttggaaa 25267103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 9456330 - 9456282
Alignment:
Q  156 cctcaaggcataagttaagaaaccaaagataaaaatattttgttggaaa 204  Q
    ||||||||||||| |||||||| |||||||| |||||||||||||||||    
T  9456330 cctcaaggcataaattaagaaatcaaagatagaaatattttgttggaaa 9456282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 12185832 - 12185784
Alignment:
Q  152 ttgtcctcaaggcataagttaagaaaccaaagataaaaatattttgttg 200  Q
    |||| ||||||||| |||||||||||| ||| ||| |||||||||||||    
T  12185832 ttgtactcaaggcacaagttaagaaactaaaaatagaaatattttgttg 12185784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 46298524 - 46298575
Alignment:
Q  153 tgtcctcaaggcataagttaagaaaccaaagataaaaatattttgttggaaa 204  Q
    |||||| ||| || |||||||||||||||||||||||| |||||||||||||    
T  46298524 tgtccttaagacacaagttaagaaaccaaagataaaaacattttgttggaaa 46298575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 25808594 - 25808557
Alignment:
Q  167 aagttaagaaaccaaagataaaaatattttgttggaaa 204  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  25808594 aagttaagaaaccaaagataaaaatattttgttagaaa 25808557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 24211445 - 24211399
Alignment:
Q  158 tcaaggcataagttaagaaaccaaagataaaaatattttgttggaaa 204  Q
    |||||||| ||||||||||| |||||||| |||||||||||||||||    
T  24211445 tcaaggcacaagttaagaaatcaaagatagaaatattttgttggaaa 24211399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 13378 - 13425
Alignment:
Q  157 ctcaaggcataagttaagaaaccaaagataaaaatattttgttggaaa 204  Q
    ||||||||| ||||||||||| |||||||| ||| |||||||||||||    
T  13378 ctcaaggcacaagttaagaaagcaaagatagaaacattttgttggaaa 13425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University