View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5524_low_1 (Length: 611)
Name: NF5524_low_1
Description: NF5524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5524_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 20 - 490
Target Start/End: Original strand, 26840215 - 26840688
Alignment:
| Q |
20 |
caagcgatagttaattggatgtcatgtgctacaagatatgattttgcatttgaacaaaagaaaaatgtgatgtgttgcttgcaagtaatcaatatttatt |
119 |
Q |
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| T |
26840215 |
caagcgatagttaatcggatggcatgtgctacaagatatgattttgcatttgaacaaaagaaaaatgtgatgtgttgcttgcaagtaatcaatatttatt |
26840314 |
T |
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| Q |
120 |
aatttttgaaaaatttcgttttgttgcttaaaaaacaaaatgaaaatagaaacacaacattgttcatgcaatgattaaaccttatctcgctagtagtaca |
219 |
Q |
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| T |
26840315 |
aatttttgcaaaatttcgttttgttgcttaaaaaacaaaatgaagatagaaacacaacattgttcatgcaatgattaaaccttatctggctagtagtaca |
26840414 |
T |
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| Q |
220 |
aatgtatatgtgtgattctgagaatgtgttttgcttctttaacaattttgcattggtgaggctttagtagcacgcacaaaatgacactacactacaacca |
319 |
Q |
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| T |
26840415 |
aatgtatatgtgtgattctgagaatgtgttttgcttctttaacaattttgcattggtgaggctttagtagcacgcacaaaatgacactacactacaacca |
26840514 |
T |
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| Q |
320 |
cgttgaaaattgctcaacatctcaaagccaagactat---aacagccagcatgtccttttttgtatatgatgattcaaccgttcaaagtctttgaattaa |
416 |
Q |
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| T |
26840515 |
cgttgaaaattgctcaacatctcaaagccaagactataacaacagccagcatgtccttttttgtatatgatgattcaaccgttcaaagtctttgaattaa |
26840614 |
T |
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| Q |
417 |
caactttagtttagttcgtaggtttgaacaactgaacacccttatagtaatagaaaactcacctaaaaccggtt |
490 |
Q |
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| T |
26840615 |
caactttagtttagttcgtaggtttgaacaactgaacacccttatagtaatagaaagctcacttgaaaccggtt |
26840688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 488 - 600
Target Start/End: Original strand, 26840736 - 26840848
Alignment:
| Q |
488 |
gttcttctacaagtcaatattgtcatttagactcaaaccattctcaaaaatatctgatcatattcattttattctttgtaattccttttactctcgggtg |
587 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
26840736 |
gttcttctacaagtcaatattgtcatttagactcaaaccattctcaaaaatatccgatcatattcattttattcattgtaattccttttactctcgggcg |
26840835 |
T |
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| Q |
588 |
cggtgatgatgtc |
600 |
Q |
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|||| |||||||| |
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| T |
26840836 |
cggttatgatgtc |
26840848 |
T |
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