View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5524_low_2 (Length: 372)
Name: NF5524_low_2
Description: NF5524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5524_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 370
Target Start/End: Original strand, 22338760 - 22339111
Alignment:
| Q |
19 |
tcataaacaacaagaagtaaaatcaatgcttctcaaatgtttcgttcttccctcttcaaaaaacccattctcctctctctcacacaacgttccttccact |
118 |
Q |
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| T |
22338760 |
tcataaacaacaacaagtaaaatcaatgcttcttaaatgtttcgttcttccctcttcaaaaaacccattctcctctctctcacacaacgttccttccact |
22338859 |
T |
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| Q |
119 |
cttccattcctcttcaatggaagcttcgtcaagaaacaacaaacctccctcaacccgaactcctcgaccgaatcacccgcctcctcatcctcaaccgtcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22338860 |
cttccattcctcttcaatggaagcttcgtcaagaaacaacaaacctccctcaccccgaactcctcgaccgaatcacccgcctcctcatcctcaaccgtcc |
22338959 |
T |
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| Q |
219 |
tcaatccctccacaatctcaccttcaaatactccgaccacctcactgattccctcctccgtcgcctccgtctccacccctccgcctgcctctccttcttc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22338960 |
tcaatccctccacaatctcaccttcaaatactccgaccacctcactgattccctcctccgtcgcctccgtctccacccctccgcctgcctctccttcttc |
22339059 |
T |
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| Q |
319 |
catctcgccacacaaaactctcattaccgcccacattccctttgcttctcca |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
22339060 |
catctcgccacacaaaactctcattaccgcccacattccctttcctactcca |
22339111 |
T |
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