View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5524_low_4 (Length: 284)

Name: NF5524_low_4
Description: NF5524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5524_low_4
NF5524_low_4
[»] chr1 (84 HSPs)
chr1 (4-265)||(11891862-11892123)
chr1 (9-263)||(11882678-11882932)
chr1 (18-265)||(11905473-11905720)
chr1 (46-265)||(52818440-52818659)
chr1 (166-265)||(11882628-11882727)
chr1 (63-263)||(11882438-11882638)
chr1 (63-263)||(11891672-11891872)
chr1 (166-265)||(11882388-11882487)
chr1 (166-265)||(11891622-11891721)
chr1 (63-265)||(11905281-11905483)
chr1 (160-263)||(52818842-52818945)
chr1 (181-263)||(11882342-11882424)
chr1 (181-263)||(11891576-11891658)
chr1 (69-218)||(11880174-11880323)
chr1 (63-263)||(11902533-11902733)
chr1 (69-263)||(11879793-11879987)
chr1 (69-263)||(11880033-11880227)
chr1 (69-218)||(11902674-11902823)
chr1 (184-263)||(11902677-11902756)
chr1 (169-260)||(11905238-11905329)
chr1 (63-125)||(11882384-11882446)
chr1 (63-125)||(11891618-11891680)
chr1 (63-125)||(52818601-52818663)
chr1 (70-218)||(11902770-11902918)
chr1 (63-123)||(11905279-11905339)
chr1 (135-263)||(52818769-52818897)
chr1 (184-263)||(11879628-11879707)
chr1 (184-263)||(11880177-11880256)
chr1 (169-236)||(11882321-11882388)
chr1 (166-257)||(11882588-11882679)
chr1 (169-236)||(11891555-11891622)
chr1 (166-257)||(11891822-11891913)
chr1 (166-257)||(11905433-11905524)
chr1 (69-119)||(11888193-11888243)
chr1 (69-119)||(11888241-11888291)
chr1 (69-119)||(11888289-11888339)
chr1 (69-119)||(11888337-11888387)
chr1 (69-119)||(11888385-11888435)
chr1 (69-119)||(11888433-11888483)
chr1 (69-119)||(11888481-11888531)
chr1 (69-119)||(11888529-11888579)
chr1 (69-119)||(11888577-11888627)
chr1 (69-119)||(11888625-11888675)
chr1 (69-119)||(11888673-11888723)
chr1 (69-119)||(11888721-11888771)
chr1 (69-119)||(11888769-11888819)
chr1 (69-119)||(11888817-11888867)
chr1 (69-119)||(11888865-11888915)
chr1 (69-119)||(11888913-11888963)
chr1 (69-119)||(11888961-11889011)
chr1 (69-119)||(11889009-11889059)
chr1 (69-119)||(11889057-11889107)
chr1 (69-119)||(11889105-11889155)
chr1 (69-119)||(11889153-11889203)
chr1 (69-119)||(11889201-11889251)
chr1 (69-119)||(11889249-11889299)
chr1 (69-119)||(11889297-11889347)
chr1 (69-119)||(11889345-11889395)
chr1 (69-119)||(11889393-11889443)
chr1 (69-119)||(11889441-11889491)
chr1 (69-119)||(11889489-11889539)
chr1 (63-265)||(11905329-11905531)
chr1 (175-233)||(52819097-52819155)
chr1 (193-263)||(52821086-52821156)
chr1 (169-257)||(52818755-52818843)
chr1 (69-125)||(52818799-52818855)
chr1 (172-263)||(11879937-11880028)
chr1 (160-263)||(11902320-11902423)
chr1 (63-125)||(11882336-11882398)
chr1 (63-125)||(11882432-11882494)
chr1 (63-125)||(11891570-11891632)
chr1 (63-125)||(11891666-11891728)
chr1 (73-119)||(52818851-52818897)
chr1 (205-263)||(52821338-52821396)
chr1 (166-263)||(11879985-11880082)
chr1 (69-122)||(11889630-11889683)
chr1 (166-263)||(11902485-11902582)
chr1 (166-263)||(52821347-52821444)
chr1 (172-248)||(11879595-11879671)
chr1 (231-263)||(11881466-11881498)
chr1 (79-119)||(11889537-11889577)
chr1 (63-119)||(11889777-11889833)
chr1 (231-263)||(11890832-11890864)
chr1 (184-260)||(52820933-52821009)
[»] scaffold1918 (4 HSPs)
scaffold1918 (169-260)||(19-110)
scaffold1918 (193-257)||(91-155)
scaffold1918 (187-257)||(448-518)
scaffold1918 (189-258)||(285-354)
[»] chr4 (1 HSPs)
chr4 (165-209)||(24482211-24482255)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 84)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 4 - 265
Target Start/End: Complemental strand, 11892123 - 11891862
Alignment:
Q  4 ggaggagcacagatgtaagctggtggtggaggtgactttactggtgggggaggactcacgtaatggtatggaggtggaggagatggcgatggtggtggag 103  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11892123 ggagaagcatagatgtaagctggtggtggaggtgactttactggtgggggaggactcacgtaatggtatggaggtggaggagatggcgatggtggtggag 11892024  T
Q  104 gggatttgtagtagtagggaggatgagaaatgggagatgggggaggaggactttgatagtgataaggaggtggtggagatggagatggaggtgggggaga 203  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11892023 gggatttgtagtagttgggaggatgagaaatgggagatgggggaggaggactttgatagtgataaggaggtggtggagatggagatggaggtgggggaga 11891924  T
Q  204 tttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaatagtagg 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11891923 tttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaatagtagg 11891862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 263
Target Start/End: Complemental strand, 11882932 - 11882678
Alignment:
Q  9 agcacagatgtaagctggtggtggaggtgactttactggtgggggaggactcacgtaatggtatggaggtggaggagatggcgatggtggtggaggggat 108  Q
    |||| |||| |||| ||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |||||||||||||||||||||    
T  11882932 agcatagatataagttggtggtggaggtgactttactggtgggggaggactcacatagtggtaaggaggtggaggagacggcgatggtggtggaggggat 11882833  T
Q  109 ttgtagtagtagggaggatgagaaatgggagatgggggaggaggactttgatagtgataaggaggtggtggagatggagatggaggtgggggagatttgt 208  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  11882832 ttgtagtagtagggaggatgagaaatgggagatggtggaggaggactttgatagtggtaaggaggtggtggagatggagatggaggtgggggagatttgt 11882733  T
Q  209 aatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaatagta 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11882732 aatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaatagta 11882678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 11905720 - 11905473
Alignment:
Q  18 gtaagctggtggtggaggtgactttactggtgggggaggactcacgtaatggtatggaggtggaggagatggcgatggtggtggaggggatttgtagtag 117  Q
    |||| ||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||    
T  11905720 gtaaactgatggtggaggagactttactggtgggggaggactcacgtaatggtacggaggtggaggagatggagacggtggtggaggggatttgtagtag 11905621  T
Q  118 tagggaggatgagaaatgggagatgggggaggaggactttgatagtgataaggaggtggtggagatggagatggaggtgggggagatttgtaatagtaag 217  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11905620 tagggaggatgagaaatgggagatggtggaggaggactttgatagtgataaggaggtggtggagatggagatggaggtgggggagatttgtaatagtaag 11905521  T
Q  218 gaggtggcggtgatggtgagggaggtggaggtgatttgtaatagtagg 265  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||    
T  11905520 gaggtggcggtgatggtgacggtggtggaggtgatttgtaatagtagg 11905473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 46 - 265
Target Start/End: Original strand, 52818440 - 52818659
Alignment:
Q  46 ggtgggggaggactcacgtaatggtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagtagggaggatgagaaatgggagatgggg 145  Q
    |||||||| |||||||| |||||||| |||||||||||||| | || ||||||||||||||||||||||| |||||||| ||||| | |||||||||| |    
T  52818440 ggtggggggggactcacataatggtaaggaggtggaggagacgccgttggtggtggaggggatttgtagtggtagggagtatgaggagtgggagatggtg 52818539  T
Q  146 gaggaggactttgatagtgataaggaggtggtggagatggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtgg 245  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| || || |||||||||||||||||||| ||||| || || || |||||    
T  52818540 gaggaggactttgatagtaataaggaggtggtggagatggagatggaggtggaggtgacttgtaatagtaaggaggtggaggtgacggggatggtggtgg 52818639  T
Q  246 aggtgatttgtaatagtagg 265  Q
    |||||||||||| |||||||    
T  52818640 aggtgatttgtagtagtagg 52818659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 166 - 265
Target Start/End: Complemental strand, 11882727 - 11882628
Alignment:
Q  166 taaggaggtggtggagatggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaatagtagg 265  Q
    ||||||||||| || ||||| || |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11882727 taaggaggtggcggtgatggtgagggaggtggaggtgatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaatagtagg 11882628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 63 - 263
Target Start/End: Complemental strand, 11882638 - 11882438
Alignment:
Q  63 gtaatggtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagtagggaggatg-agaaatgggagatgggggaggaggactttgata 161  Q
    ||||| ||| ||||| || || ||||| ||||||||||| || ||||||||||| || || ||||| || |   |||||||| ||||| |||||||  ||    
T  11882638 gtaatagtagggagggggtggggatggtgatggtggtggtggagatttgtagtaatatgg-ggatggaggagatggagatggtggagggggacttttgta 11882540  T
Q  162 gtgataaggaggtggtggagatggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaatag 261  Q
    ||  || ||||||||||| ||||| ||||| ||||| || ||||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||    
T  11882539 gtagtatggaggtggtggtgatggggatggtggtggaggtgatttgtaatagtaaggaggtggtggtgatggtgatggtggtggaggagatttgtaatag 11882440  T
Q  262 ta 263  Q
    ||    
T  11882439 ta 11882438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 63 - 263
Target Start/End: Complemental strand, 11891872 - 11891672
Alignment:
Q  63 gtaatggtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagtagggaggatg-agaaatgggagatgggggaggaggactttgata 161  Q
    ||||| ||| ||||| || || ||||| ||||||||||| || ||||||||||| || || ||||| || |   |||||||| ||||| |||||||  ||    
T  11891872 gtaatagtagggagggggtggggatggtgatggtggtggtggagatttgtagtaatatgg-ggatggaggagatggagatggtggagggggacttttgta 11891774  T
Q  162 gtgataaggaggtggtggagatggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaatag 261  Q
    ||  || ||||||||||| ||||| ||||| ||||| || ||||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||    
T  11891773 gtagtatggaggtggtggtgatggggatggtggtggaggtgatttgtaatagtaaggaggtggtggtgatggtgatggtggtggaggagatttgtaatag 11891674  T
Q  262 ta 263  Q
    ||    
T  11891673 ta 11891672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 166 - 265
Target Start/End: Complemental strand, 11882487 - 11882388
Alignment:
Q  166 taaggaggtggtggagatggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaatagtagg 265  Q
    |||||||||||||| ||||| ||||| ||||| ||||||||||||||||| ||||| || ||||||||||| || |||||||||||||||||||||||||    
T  11882487 taaggaggtggtggtgatggtgatggtggtggaggagatttgtaatagtatggagggggaggtgatggtgatggtggtggaggtgatttgtaatagtagg 11882388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 166 - 265
Target Start/End: Complemental strand, 11891721 - 11891622
Alignment:
Q  166 taaggaggtggtggagatggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaatagtagg 265  Q
    |||||||||||||| ||||| ||||| ||||| ||||||||||||||||| ||||| || ||||||||||| || |||||||||||||||||||||||||    
T  11891721 taaggaggtggtggtgatggtgatggtggtggaggagatttgtaatagtatggagggggaggtgatggtgatggtggtggaggtgatttgtaatagtagg 11891622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 63 - 265
Target Start/End: Complemental strand, 11905483 - 11905281
Alignment:
Q  63 gtaatggtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagtagggaggatgagaaatgggagatgggggaggaggactttgatag 162  Q
    ||||| ||| ||||| || || ||||| ||||||||||| || ||||||||||| || || ||| ||| |  |||||| || ||||| || ||||  |||    
T  11905483 gtaatagtagggagggggtggtgatggtgatggtggtggtggagatttgtagtaatatgggggaggaggagagggagaaggtggaggggggcttttgtag 11905384  T
Q  163 tgataaggaggtggtggagatggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaatagt 262  Q
    |  || |||||||| || ||||| ||||| ||||| || |||||||||||||| |||||||| |||||||| || || ||||||||||||||||||||||    
T  11905383 tagtatggaggtggaggcgatggtgatggtggtggaggtgatttgtaatagtagggaggtggtggtgatggcgatggtggtggaggtgatttgtaatagt 11905284  T
Q  263 agg 265  Q
    |||    
T  11905283 agg 11905281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 263
Target Start/End: Original strand, 52818842 - 52818945
Alignment:
Q  160 tagtgataaggaggtggtggagatggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaat 259  Q
    |||| ||||||||||||||||||||| ||||| ||||| || |||| ||||||||| || || || || ||||||||||| |||||||| ||||| ||||    
T  52818842 tagtaataaggaggtggtggagatggtgatggtggtggaggggattggtaatagtacggtggaggtggggatggtgagggtggtggaggagatttataat 52818941  T
Q  260 agta 263  Q
    ||||    
T  52818942 agta 52818945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 11882424 - 11882342
Alignment:
Q  181 gatggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaatagta 263  Q
    ||||| ||||| ||||| || |||||||||||||| |||||||| ||||||||||| || |||||||| ||||||||||||||    
T  11882424 gatggtgatggtggtggaggtgatttgtaatagtagggaggtggtggtgatggtgatggtggtggaggagatttgtaatagta 11882342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 11891658 - 11891576
Alignment:
Q  181 gatggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaatagta 263  Q
    ||||| ||||| ||||| || |||||||||||||| |||||||| ||||||||||| || |||||||| ||||||||||||||    
T  11891658 gatggtgatggtggtggaggtgatttgtaatagtagggaggtggtggtgatggtgatggtggtggaggagatttgtaatagta 11891576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 69 - 218
Target Start/End: Complemental strand, 11880323 - 11880174
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagtagggaggatgagaaatgggagatgggggaggaggactttgatagtgataa 168  Q
    |||||| |||||||||||||| || |||||||| || |||||||| ||||| || | | | | ||| |||||||| |||||||||  ||  ||||  ||     
T  11880323 gtatggtggtggaggagatggtgaaggtggtgggggagatttgtaatagtaaggtgtacggggaataggagatggaggaggaggagatttgtagtagtat 11880224  T
Q  169 ggaggtggtggagatggagatggaggtgggggagatttgtaatagtaagg 218  Q
    || ||||| |||||||| || || ||||||||||||||||||||||||||    
T  11880223 ggtggtggaggagatggtgaaggtggtgggggagatttgtaatagtaagg 11880174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 263
Target Start/End: Complemental strand, 11902733 - 11902533
Alignment:
Q  63 gtaatggtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagtagggaggatgagaaatgggagatgggggaggaggactttgatag 162  Q
    ||||| |||||| |||||||||||||| || |||||||| || |||||||| ||||| || | ||| | ||| |||||||| |||||||||  ||  ||     
T  11902733 gtaatagtatggtggtggaggagatggtgaaggtggtgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatttgtaa 11902634  T
Q  163 tgataaggaggtggtggagatggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaatagt 262  Q
    |  || || ||||| |||||||| || || ||||| ||||| |||||||||||||| || || || || |||||||| ||||| || ||||| || ||||    
T  11902633 tagtatggtggtggaggagatggtgaaggtggtggaggagacttgtaatagtaaggtgggggtggagagggtgagggtggtgggggagatttatagtagt 11902534  T
Q  263 a 263  Q
    |    
T  11902533 a 11902533  T

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Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 263
Target Start/End: Complemental strand, 11879987 - 11879793
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagtagggaggatgagaaatgggagatgggggaggaggactttgatagtgataa 168  Q
    |||||| |||||||||||||| || || ||||| || |||||||||||||| || |  |  | ||| |||||||| |||||||||  ||  ||||  ||     
T  11879987 gtatggtggtggaggagatggtgaagggggtgggggagatttgtagtagtaaggtgttttgggaataggagatggaggaggaggagatttgtagtagtat 11879888  T
Q  169 ggaggtggtggagatggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaatagta 263  Q
    || ||||| ||||| || || || ||||||||||||||||| ||||| || ||||| || |||||||| || ||||| || || |||||||||||    
T  11879887 ggtggtggaggagacggtgaagggggtgggggagatttgtagtagtatggtggtggaggagatggtgaaggtggtggtggggacttgtaatagta 11879793  T

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Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 263
Target Start/End: Complemental strand, 11880227 - 11880033
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagtagggaggatgagaaatgggagatgggggaggaggactttgatagtgataa 168  Q
    |||||| |||||||||||||| || |||||||| || |||||||| ||||| || | ||| | ||| |||||||| |||||||||  ||  ||||  ||     
T  11880227 gtatggtggtggaggagatggtgaaggtggtgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatttgtagtagtat 11880128  T
Q  169 ggaggtggtggagatggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaatagta 263  Q
    || ||||| |||||||| || || || || ||||| |||||||||||||| ||||| || || ||||| || ||||| || ||||| || |||||    
T  11880127 ggtggtggaggagatggtgaaggtgggggaggagacttgtaatagtaaggtggtggtggagagggtgacggtggtgggggagatttatagtagta 11880033  T

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Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 69 - 218
Target Start/End: Complemental strand, 11902823 - 11902674
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagtagggaggatgagaaatgggagatgggggaggaggactttgatagtgataa 168  Q
    |||||| |||||||||||||| || |||||||| || |||||||| ||||| || | | | | ||| |||||||| |||||||||  ||  || |  ||     
T  11902823 gtatggtggtggaggagatggtgaaggtggtgggggagatttgtaatagtaaggtgtacggggaataggagatggaggaggaggagatttgtaatagtat 11902724  T
Q  169 ggaggtggtggagatggagatggaggtgggggagatttgtaatagtaagg 218  Q
    || ||||| |||||||| || || ||||||||||||||||||||||||||    
T  11902723 ggtggtggaggagatggtgaaggtggtgggggagatttgtaatagtaagg 11902674  T

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Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 263
Target Start/End: Complemental strand, 11902756 - 11902677
Alignment:
Q  184 ggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaatagta 263  Q
    ||||||||||| || ||||||||||||||||| || ||||| || |||||||| || ||||| || ||||||||||||||    
T  11902756 ggagatggaggaggaggagatttgtaatagtatggtggtggaggagatggtgaaggtggtgggggagatttgtaatagta 11902677  T

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Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 260
Target Start/End: Complemental strand, 11905329 - 11905238
Alignment:
Q  169 ggaggtggtggagatggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaata 260  Q
    ||||||||||| ||||| ||||| ||||| || |||||||||||||| ||| || | |||||||| || || |||||||| |||||||||||    
T  11905329 ggaggtggtggtgatggcgatggtggtggaggtgatttgtaatagtagggatgttgtggtgatggggatggtggtggaggagatttgtaata 11905238  T

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Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 11882446 - 11882384
Alignment:
Q  63 gtaatggtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagtagggagg 125  Q
    ||||| ||||||||| ||||| ||||| |||||||||||||| |||||||| |||||||||||    
T  11882446 gtaatagtatggagggggaggtgatggtgatggtggtggaggtgatttgtaatagtagggagg 11882384  T

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Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 11891680 - 11891618
Alignment:
Q  63 gtaatggtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagtagggagg 125  Q
    ||||| ||||||||| ||||| ||||| |||||||||||||| |||||||| |||||||||||    
T  11891680 gtaatagtatggagggggaggtgatggtgatggtggtggaggtgatttgtaatagtagggagg 11891618  T

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Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 52818601 - 52818663
Alignment:
Q  63 gtaatggtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagtagggagg 125  Q
    ||||| ||| ||||||||||| || || |||||||||||||| ||||||||||||||||||||    
T  52818601 gtaatagtaaggaggtggaggtgacggggatggtggtggaggtgatttgtagtagtagggagg 52818663  T

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Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 218
Target Start/End: Complemental strand, 11902918 - 11902770
Alignment:
Q  70 tatggaggtggaggagatggcgatggtggtggaggggatttgtagtagtagggaggatgagaaatgggagatgggggaggaggactttgatagtgataag 169  Q
    ||||| ||||||||||| || || |||||||| || ||| |||| ||||| || | ||| | ||||||||||||  |||||||   ||  ||||  || |    
T  11902918 tatggtggtggaggagacggtgaaggtggtgggggagatgtgtaatagtaaggtgtatggggaatgggagatggatgaggaggggatttgtagtagtatg 11902819  T
Q  170 gaggtggtggagatggagatggaggtgggggagatttgtaatagtaagg 218  Q
    | ||||| |||||||| || || ||||||||||||||||||||||||||    
T  11902818 gtggtggaggagatggtgaaggtggtgggggagatttgtaatagtaagg 11902770  T

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Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 11905339 - 11905279
Alignment:
Q  63 gtaatggtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagtaggga 123  Q
    ||||| ||| |||||||| || |||||||||||||||||||| |||||||| |||||||||    
T  11905339 gtaatagtagggaggtggtggtgatggcgatggtggtggaggtgatttgtaatagtaggga 11905279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 263
Target Start/End: Original strand, 52818769 - 52818897
Alignment:
Q  135 gggagatgggggaggaggactttgatagtgataaggaggtggtggagatggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggt 234  Q
    |||||| || ||||| |||||||  ||||  || |||||||| || ||||| | ||| ||||| || |||||||| || ||||||||||| || ||||||    
T  52818769 gggagagggtggagggggacttttgtagtagtatggaggtggaggtgatggggttggtggtggaggtgatttgtagtaataaggaggtggtggagatggt 52818868  T
Q  235 gagggaggtggaggtgatttgtaatagta 263  Q
    || || |||||||| |||| |||||||||    
T  52818869 gatggtggtggaggggattggtaatagta 52818897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 263
Target Start/End: Complemental strand, 11879707 - 11879628
Alignment:
Q  184 ggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaatagta 263  Q
    |||||||| ||||| ||||| ||||||||||| || ||||| || || |||||||| |||||||| |||||||| |||||    
T  11879707 ggagatggtggtggaggagacttgtaatagtatggtggtggtggggaaggtgagggtggtggaggagatttgtagtagta 11879628  T

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Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 263
Target Start/End: Complemental strand, 11880256 - 11880177
Alignment:
Q  184 ggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaatagta 263  Q
    ||||||||||| || ||||||||||| ||||| || ||||| || |||||||| || ||||| || ||||||||||||||    
T  11880256 ggagatggaggaggaggagatttgtagtagtatggtggtggaggagatggtgaaggtggtgggggagatttgtaatagta 11880177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 11882388 - 11882321
Alignment:
Q  169 ggaggtggtggagatggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtga 236  Q
    ||||||||||| ||||| ||||| ||||| ||||||||||||||||| ||||| || || ||||||||    
T  11882388 ggaggtggtggtgatggtgatggtggtggaggagatttgtaatagtatggagggggaggggatggtga 11882321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 257
Target Start/End: Complemental strand, 11882679 - 11882588
Alignment:
Q  166 taaggaggtggtggagatggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgta 257  Q
    ||||||||||| || ||||| || |||||||| || |||||||||||||| ||||| || || |||||||| || ||||| || ||||||||    
T  11882679 taaggaggtggcggtgatggtgagggaggtggaggtgatttgtaatagtagggagggggtggggatggtgatggtggtggtggagatttgta 11882588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 11891622 - 11891555
Alignment:
Q  169 ggaggtggtggagatggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtga 236  Q
    ||||||||||| ||||| ||||| ||||| ||||||||||||||||| ||||| || || ||||||||    
T  11891622 ggaggtggtggtgatggtgatggtggtggaggagatttgtaatagtatggagggggaggggatggtga 11891555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 257
Target Start/End: Complemental strand, 11891913 - 11891822
Alignment:
Q  166 taaggaggtggtggagatggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgta 257  Q
    ||||||||||| || ||||| || |||||||| || |||||||||||||| ||||| || || |||||||| || ||||| || ||||||||    
T  11891913 taaggaggtggcggtgatggtgagggaggtggaggtgatttgtaatagtagggagggggtggggatggtgatggtggtggtggagatttgta 11891822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 257
Target Start/End: Complemental strand, 11905524 - 11905433
Alignment:
Q  166 taaggaggtggtggagatggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgta 257  Q
    ||||||||||| || ||||| || || ||||| || |||||||||||||| ||||| || ||||||||||| || ||||| || ||||||||    
T  11905524 taaggaggtggcggtgatggtgacggtggtggaggtgatttgtaatagtagggagggggtggtgatggtgatggtggtggtggagatttgta 11905433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 11888243 - 11888193
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagta 119  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||    
T  11888243 gtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagta 11888193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 11888291 - 11888241
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagta 119  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||    
T  11888291 gtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagta 11888241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 11888339 - 11888289
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagta 119  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||    
T  11888339 gtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagta 11888289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 11888387 - 11888337
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagta 119  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||    
T  11888387 gtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagta 11888337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 11888435 - 11888385
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagta 119  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||    
T  11888435 gtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagta 11888385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 11888483 - 11888433
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagta 119  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||    
T  11888483 gtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagta 11888433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 11888531 - 11888481
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagta 119  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||    
T  11888531 gtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagta 11888481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 11888579 - 11888529
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagta 119  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||    
T  11888579 gtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagta 11888529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 11888627 - 11888577
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagta 119  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||    
T  11888627 gtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagta 11888577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 11888675 - 11888625
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagta 119  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||    
T  11888675 gtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagta 11888625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 11888723 - 11888673
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagta 119  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||    
T  11888723 gtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagta 11888673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 11888771 - 11888721
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagta 119  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||    
T  11888771 gtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagta 11888721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 11888819 - 11888769
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagta 119  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||    
T  11888819 gtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagta 11888769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 11888867 - 11888817
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagta 119  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||    
T  11888867 gtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagta 11888817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 11888915 - 11888865
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagta 119  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||    
T  11888915 gtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagta 11888865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 11888963 - 11888913
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagta 119  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||    
T  11888963 gtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagta 11888913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 11889011 - 11888961
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagta 119  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||    
T  11889011 gtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagta 11888961  T

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Target: chr1; HSP #51
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 11889059 - 11889009
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagta 119  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||    
T  11889059 gtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagta 11889009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 11889107 - 11889057
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagta 119  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||    
T  11889107 gtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagta 11889057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 11889155 - 11889105
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagta 119  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||    
T  11889155 gtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagta 11889105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 11889203 - 11889153
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagta 119  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||    
T  11889203 gtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagta 11889153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 11889251 - 11889201
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagta 119  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||    
T  11889251 gtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagta 11889201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 11889299 - 11889249
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagta 119  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||    
T  11889299 gtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagta 11889249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 11889347 - 11889297
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagta 119  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||    
T  11889347 gtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagta 11889297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #58
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 11889395 - 11889345
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagta 119  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||    
T  11889395 gtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagta 11889345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #59
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 11889443 - 11889393
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagta 119  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||    
T  11889443 gtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagta 11889393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #60
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 11889491 - 11889441
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagta 119  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||    
T  11889491 gtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagta 11889441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #61
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 11889539 - 11889489
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagta 119  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||    
T  11889539 gtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagta 11889489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #62
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 265
Target Start/End: Complemental strand, 11905531 - 11905329
Alignment:
Q  63 gtaatggtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagtagggaggatgagaaatgggagatgggggaggaggactttgatag 162  Q
    ||||| ||| |||||||| || ||||| || ||||||||||| |||||||| |||||||||||  | |     || ||||| || || |||  ||  |||    
T  11905531 gtaatagtaaggaggtggcggtgatggtgacggtggtggaggtgatttgtaatagtagggagggggtggtgatggtgatggtggtggtggagatttgtag 11905432  T
Q  163 tgataaggaggtggtggagatggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaatagt 262  Q
    | ||| || || || ||||| ||||| || || |||||   |||||| ||||| |||||||| || |||||||| || ||||||||||||||||||||||    
T  11905431 taatatgggggaggaggagagggagaaggtggaggggggcttttgtagtagtatggaggtggaggcgatggtgatggtggtggaggtgatttgtaatagt 11905332  T
Q  263 agg 265  Q
    |||    
T  11905331 agg 11905329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #63
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 52819097 - 52819155
Alignment:
Q  175 ggtggagatggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatgg 233  Q
    ||||| ||||| ||||| ||||||||||||||||||||||| ||||| || ||||||||    
T  52819097 ggtggggatggtgatggcggtgggggagatttgtaatagtatggagggggaggtgatgg 52819155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #64
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 263
Target Start/End: Original strand, 52821086 - 52821156
Alignment:
Q  193 ggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaatagta 263  Q
    ||||||||||| ||||| |||||||||||||| ||||| || ||||| |||||||| || ||||| |||||    
T  52821086 ggtgggggagacttgtagtagtaaggaggtggaggtgagggagagggtggtggaggagacttgtagtagta 52821156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #65
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 52818755 - 52818843
Alignment:
Q  169 ggaggtggtggagatggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgta 257  Q
    |||||||| ||||| ||||| || || ||||||  |||||| ||||| |||||||| |||||||| |  || |||||||||||||||||    
T  52818755 ggaggtggaggagagggagagggtggagggggacttttgtagtagtatggaggtggaggtgatggggttggtggtggaggtgatttgta 52818843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #66
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 52818799 - 52818855
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagtagggagg 125  Q
    ||||||||||||||| ||||| | |||||||||||| ||||||||||| || |||||    
T  52818799 gtatggaggtggaggtgatggggttggtggtggaggtgatttgtagtaataaggagg 52818855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #67
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 263
Target Start/End: Complemental strand, 11880028 - 11879937
Alignment:
Q  172 ggtggtggagatggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaatagta 263  Q
    ||||| ||||| || || || ||||||||||||||||| ||||| || ||||| || |||||||| || ||||| || |||||||| |||||    
T  11880028 ggtggaggagacggtgaagggggtgggggagatttgtagtagtatggtggtggaggagatggtgaagggggtgggggagatttgtagtagta 11879937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #68
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 263
Target Start/End: Complemental strand, 11902423 - 11902320
Alignment:
Q  160 tagtgataaggaggtggtggagatggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaat 259  Q
    |||| ||| ||||| ||||| || |||||||| ||||| ||||| ||||||||||| || || || || || |||||||| |||||||| ||||| || |    
T  11902423 tagtaatatggaggaggtggtgagggagatggtggtggaggagacttgtaatagtatggtgggggaggggaaggtgagggtggtggaggcgatttatagt 11902324  T
Q  260 agta 263  Q
    ||||    
T  11902323 agta 11902320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #69
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 11882398 - 11882336
Alignment:
Q  63 gtaatggtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagtagggagg 125  Q
    ||||| ||| |||||||| || ||||| |||||||||||||| |||||||| ||||| |||||    
T  11882398 gtaatagtagggaggtggtggtgatggtgatggtggtggaggagatttgtaatagtatggagg 11882336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #70
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 11882494 - 11882432
Alignment:
Q  63 gtaatggtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagtagggagg 125  Q
    ||||| ||| |||||||| || ||||| |||||||||||||| |||||||| ||||| |||||    
T  11882494 gtaatagtaaggaggtggtggtgatggtgatggtggtggaggagatttgtaatagtatggagg 11882432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #71
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 11891632 - 11891570
Alignment:
Q  63 gtaatggtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagtagggagg 125  Q
    ||||| ||| |||||||| || ||||| |||||||||||||| |||||||| ||||| |||||    
T  11891632 gtaatagtagggaggtggtggtgatggtgatggtggtggaggagatttgtaatagtatggagg 11891570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #72
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 11891728 - 11891666
Alignment:
Q  63 gtaatggtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagtagggagg 125  Q
    ||||| ||| |||||||| || ||||| |||||||||||||| |||||||| ||||| |||||    
T  11891728 gtaatagtaaggaggtggtggtgatggtgatggtggtggaggagatttgtaatagtatggagg 11891666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #73
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 52818851 - 52818897
Alignment:
Q  73 ggaggtggaggagatggcgatggtggtggaggggatttgtagtagta 119  Q
    |||||||| |||||||| ||||||||||||||||||| ||| |||||    
T  52818851 ggaggtggtggagatggtgatggtggtggaggggattggtaatagta 52818897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #74
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 52821338 - 52821396
Alignment:
Q  205 ttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaatagta 263  Q
    ||||| |||||||||||||| ||||| || ||||| ||||||||||| ||||| |||||    
T  52821338 ttgtagtagtaaggaggtggaggtgagggagagggtggtggaggtgacttgtagtagta 52821396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #75
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 263
Target Start/End: Complemental strand, 11880082 - 11879985
Alignment:
Q  166 taaggaggtggtggagatggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaatagta 263  Q
    ||||| ||||||||||| || || || |||||||||||||| || ||||| || ||||| || || ||||| || ||||| || |||||||| |||||    
T  11880082 taaggtggtggtggagagggtgacggtggtgggggagatttatagtagtatggtggtggaggagacggtgaagggggtgggggagatttgtagtagta 11879985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #76
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 11889683 - 11889630
Alignment:
Q  69 gtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagtaggg 122  Q
    |||||| |||||||||||||| || |||||||| || ||||| |||||||||||    
T  11889683 gtatggtggtggaggagatggtgaaggtggtgggggtgatttatagtagtaggg 11889630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #77
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 263
Target Start/End: Complemental strand, 11902582 - 11902485
Alignment:
Q  166 taaggaggtggtggagatggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaatagta 263  Q
    ||||| || |||||||| || || || |||||||||||||| || ||||| || ||||| || |||||||| || ||||| || || |||||||||||    
T  11902582 taaggtgggggtggagagggtgagggtggtgggggagatttatagtagtatggtggtggaggagatggtgaagggggtggtggggacttgtaatagta 11902485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #78
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 263
Target Start/End: Original strand, 52821347 - 52821444
Alignment:
Q  166 taaggaggtggtggagatggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaatagta 263  Q
    ||||||||||| || || ||||| || ||||| || || ||||| |||||||||||||| ||||| || ||||| ||||| || || ||||| |||||    
T  52821347 taaggaggtggaggtgagggagagggtggtggaggtgacttgtagtagtaaggaggtggaggtgagggagagggtggtggtggggacttgtagtagta 52821444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #79
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 11879671 - 11879595
Alignment:
Q  172 ggtggtggagatggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggagg 248  Q
    |||||||| || || || || ||||| ||||||||||| |||||||||||||| ||||| || || || ||||||||    
T  11879671 ggtggtggggaaggtgagggtggtggaggagatttgtagtagtaaggaggtggaggtgaaggagaaggtggtggagg 11879595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #80
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 263
Target Start/End: Complemental strand, 11881498 - 11881466
Alignment:
Q  231 tggtgagggaggtggaggtgatttgtaatagta 263  Q
    ||||||||||||||||||||||||||| |||||    
T  11881498 tggtgagggaggtggaggtgatttgtagtagta 11881466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #81
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 11889577 - 11889537
Alignment:
Q  79 ggaggagatggcgatggtggtggaggggatttgtagtagta 119  Q
    |||||||| ||||||||||| || |||||||||||||||||    
T  11889577 ggaggagaaggcgatggtggaggtggggatttgtagtagta 11889537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #82
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 11889833 - 11889777
Alignment:
Q  63 gtaatggtatggaggtggaggagatggcgatggtggtggaggggatttgtagtagta 119  Q
    ||||| |||||| |||||||||||||| || |||||||| ||||| ||||| |||||    
T  11889833 gtaatagtatggtggtggaggagatggtgaaggtggtggtggggacttgtaatagta 11889777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #83
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 263
Target Start/End: Complemental strand, 11890864 - 11890832
Alignment:
Q  231 tggtgagggaggtggaggtgatttgtaatagta 263  Q
    ||||||||||||||||||||||||||| |||||    
T  11890864 tggtgagggaggtggaggtgatttgtagtagta 11890832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #84
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 260
Target Start/End: Original strand, 52820933 - 52821009
Alignment:
Q  184 ggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaata 260  Q
    ||||||||||| || ||||| |||||||| || || ||||| || |||||||| || |||||||| ||||| |||||    
T  52820933 ggagatggaggaggaggagacttgtaataatagggtggtggaggagatggtgaaggtggtggaggagatttataata 52821009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1918 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: scaffold1918
Description:

Target: scaffold1918; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 260
Target Start/End: Original strand, 19 - 110
Alignment:
Q  169 ggaggtggtggagatggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaata 260  Q
    |||||||| || || |||||||| ||||| |||||||||||||||||||| ||||| || ||  ||||||| ||||| || |||||||||||    
T  19 ggaggtggaggtgagggagatggtggtggtggagatttgtaatagtaaggtggtggaggggaatgtgaggggggtgggggggatttgtaata 110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1918; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 257
Target Start/End: Original strand, 91 - 155
Alignment:
Q  193 ggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgta 257  Q
    |||||||| ||||||||||| ||||||||||| |||||||| || ||||| || ||||| |||||    
T  91 ggtgggggggatttgtaataataaggaggtggaggtgatggggatggaggaggtggtgacttgta 155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1918; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 257
Target Start/End: Original strand, 448 - 518
Alignment:
Q  187 gatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgta 257  Q
    ||||||||||| || || ||||||  |||||| ||||| ||||||||||| |||||||| ||||| |||||    
T  448 gatggaggtggtggtgacttgtaaatgtaaggtggtggaggtgatggtgatggaggtgggggtgacttgta 518  T

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Target: scaffold1918; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 285 - 354
Alignment:
Q  189 tggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaa 258  Q
    ||||||||| ||||||||||||  |||||  ||||| ||||| ||||||||||| || ||||| ||||||    
T  285 tggaggtggtggagatttgtaaatgtaagatggtggaggtgacggtgagggaggcggtggtgacttgtaa 354  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 24482211 - 24482255
Alignment:
Q  165 ataaggaggtggtggagatggagatggaggtgggggagatttgta 209  Q
    ||||||||||||||| ||||||||||| ||||| |||||||||||    
T  24482211 ataaggaggtggtggtgatggagatggtggtggtggagatttgta 24482255  T

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