View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5525-Insertion-1 (Length: 669)

Name: NF5525-Insertion-1
Description: NF5525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5525-Insertion-1
NF5525-Insertion-1
[»] chr1 (13 HSPs)
chr1 (199-653)||(52455706-52456158)
chr1 (14-113)||(50267647-50267747)
chr1 (152-206)||(50950897-50950951)
chr1 (12-97)||(48685469-48685555)
chr1 (151-193)||(30466187-30466229)
chr1 (162-200)||(34716422-34716460)
chr1 (151-202)||(38931310-38931361)
chr1 (88-143)||(48686105-48686160)
chr1 (527-641)||(48975755-48975869)
chr1 (162-199)||(43317128-43317165)
chr1 (151-199)||(41884230-41884278)
chr1 (151-199)||(47334198-47334246)
chr1 (151-199)||(48835098-48835146)
[»] chr7 (13 HSPs)
chr7 (8-198)||(32870998-32871188)
chr7 (83-142)||(36845135-36845194)
chr7 (151-200)||(42607079-42607128)
chr7 (97-198)||(12732247-12732348)
chr7 (151-199)||(24995851-24995899)
chr7 (151-199)||(29060740-29060788)
chr7 (161-199)||(6730168-6730206)
chr7 (88-122)||(32870341-32870375)
chr7 (161-199)||(40320421-40320459)
chr7 (162-199)||(5064657-5064694)
chr7 (151-192)||(24996684-24996725)
chr7 (161-198)||(36844612-36844649)
chr7 (151-200)||(42607813-42607862)
[»] chr4 (9 HSPs)
chr4 (8-199)||(7987407-7987598)
chr4 (542-626)||(49129101-49129184)
chr4 (527-598)||(2178928-2178999)
chr4 (531-596)||(6120771-6120836)
chr4 (151-199)||(39429938-39429986)
chr4 (88-143)||(7988221-7988276)
chr4 (151-198)||(25970106-25970153)
chr4 (162-200)||(54453093-54453131)
chr4 (161-200)||(20351322-20351361)
[»] chr8 (10 HSPs)
chr8 (499-625)||(10890583-10890708)
chr8 (499-603)||(5572546-5572650)
chr8 (162-203)||(42346117-42346158)
chr8 (151-198)||(35840531-35840578)
chr8 (151-198)||(37562295-37562342)
chr8 (161-199)||(35943075-35943113)
chr8 (162-198)||(35839722-35839758)
chr8 (158-198)||(35943847-35943887)
chr8 (151-199)||(39862903-39862951)
chr8 (151-191)||(42345401-42345441)
[»] chr3 (7 HSPs)
chr3 (9-86)||(28886913-28886990)
chr3 (83-199)||(49161741-49161857)
chr3 (151-200)||(33455782-33455831)
chr3 (164-200)||(49160985-49161021)
chr3 (151-198)||(43768760-43768807)
chr3 (151-191)||(43768033-43768073)
chr3 (151-199)||(51421676-51421724)
[»] chr2 (8 HSPs)
chr2 (499-600)||(32553689-32553790)
chr2 (83-193)||(23875245-23875355)
chr2 (83-198)||(6084871-6084986)
chr2 (151-201)||(36390954-36391004)
chr2 (151-199)||(20992020-20992068)
chr2 (151-199)||(23876064-23876112)
chr2 (151-200)||(6085702-6085751)
chr2 (151-200)||(7868142-7868191)
[»] chr5 (8 HSPs)
chr5 (83-198)||(42650757-42650872)
chr5 (161-205)||(9923381-9923425)
chr5 (535-627)||(26414461-26414552)
chr5 (151-197)||(4789521-4789567)
chr5 (161-199)||(6804890-6804928)
chr5 (166-199)||(1969778-1969811)
chr5 (151-191)||(1970515-1970555)
chr5 (527-555)||(28739702-28739730)
[»] chr6 (6 HSPs)
chr6 (151-198)||(29290123-29290170)
chr6 (161-198)||(8384029-8384066)
chr6 (151-200)||(25067851-25067900)
chr6 (527-555)||(6956419-6956447)
chr6 (527-555)||(23059213-23059241)
chr6 (164-200)||(28975338-28975374)
[»] scaffold0150 (1 HSPs)
scaffold0150 (161-198)||(14012-14049)


Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 199 - 653
Target Start/End: Original strand, 52455706 - 52456158
Alignment:
Q  199 taaaacttatcccaatgtcaaattcaatgacaaaccatggtcaaacatccactatctnnnnnnntataattgtggtgaacacgggcagatgtcaaccaaa 298  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||       ||||||||||||||||||||| ||||||||||||||    
T  52455706 taaaacttatcccaatgtcaaattcaatggcaaaccatggtcaaacatccactatctaaaaaa-tataattgtggtgaacacgggtagatgtcaaccaaa 52455804  T
Q  299 tagctagtcgtacaaagtacaattttcccttcaactcaacaataataacaagatgtcattgataattgtggccgactaagttcaaacattcatgaagatc 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  52455805 tagctagtcgtacaaagtacaattttcccttcaactcaacaatatgaacaagatgtcatggataattgtggccgactaagttcaaacattcatgaagatt 52455904  T
Q  399 tactcccttaataataaggtgatggatgacatggataatagaactatgcgaacaataccattttaagttgttactcaatctacgaggtagttacttacca 498  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| |||||||||||| |||||     
T  52455905 tactcccttaataataaggtgatggatgacatggataatataactatgcgaacaataccattttaagttgtaattcaatccacgaggtagttatttaccg 52456004  T
Q  499 tggcgaatcgtgaaatattttcttgacagtgccagaattgtatgaaatatatattaagttgtttaaagaaaaggatataattgttaactagtccagtggt 598  Q
    ||||| ||| ||||||||||| ||||  |||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  52456005 tggcggatcttgaaatatttttttgagggtgttagaattgtatgaaatatatattaagttgtttgaagaaaaggatataattgttaactagtccaatggt 52456104  T
Q  599 ttgtttttgcttgaatgcagagcaggggtgccagtttgaatccctataagagcca 653  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52456105 ttg-ttttgcttgaatgcagagcaggggtgccagtttgaatccctataagagcca 52456158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 50267747 - 50267647
Alignment:
Q  14 gtggtgaagttcatgttgctggtgggtgagtgaggacatggaagagagacaagggtgatggaatagtgt-aaaataatatagtattgagagactatgata 112  Q
    ||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||| || |||| ||| ||||||||||||| | |||||| |||||||    
T  50267747 gtggtgaagttgatgttgctggtgggtgagtggggacatggaggagagacaagggtggtgtaataatgtaaaaataatatagtgtggagagaatatgata 50267648  T
Q  113 a 113  Q
    |    
T  50267647 a 50267647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 50950897 - 50950951
Alignment:
Q  152 tttcctatagtgggaaacaactccccattcccatgctaaaccccacctaaaactt 206  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||    
T  50950897 tttcctatggtgggaaacaacttcccattcccatgctaaaccccacctaagactt 50950951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 48685555 - 48685469
Alignment:
Q  12 tggtggtgaagttcatgttgctggtgggtgagtgaggacatggaagagagacaagggtgatggaatagtgt-aaaataatatagtat 97  Q
    ||||||||||||| |||||| ||  ||||||||| | ||||||| |||||||||||||| || |||| ||| |||||||||||||||    
T  48685555 tggtggtgaagttgatgttgttgtagggtgagtgggaacatggaggagagacaagggtggtgtaatattgtaaaaataatatagtat 48685469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 193
Target Start/End: Complemental strand, 30466229 - 30466187
Alignment:
Q  151 ctttcctatagtgggaaacaactccccattcccatgctaaacc 193  Q
    |||||| || |||||||||||||||||||||||||||||||||    
T  30466229 ctttcccatggtgggaaacaactccccattcccatgctaaacc 30466187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 34716460 - 34716422
Alignment:
Q  162 tgggaaacaactccccattcccatgctaaaccccaccta 200  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  34716460 tgggaaacaactctccattcccatgctaaaccccaccta 34716422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 38931361 - 38931310
Alignment:
Q  151 ctttcctatagtgggaaacaactccccattcccatgctaaaccccacctaaa 202  Q
    |||||| || ||||||||||| ||||| ||| ||||||||||||||||||||    
T  38931361 ctttcccatggtgggaaacaattcccctttctcatgctaaaccccacctaaa 38931310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 48686105 - 48686160
Alignment:
Q  88 aatatagtattgagagactatgataatattatgttctttacatgatcaaatggtcc 143  Q
    |||||||| |||||||||||| |||||||||||||| |||| | ||| ||||||||    
T  48686105 aatatagtgttgagagactattataatattatgttccttacttaatctaatggtcc 48686160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 527 - 641
Target Start/End: Original strand, 48975755 - 48975869
Alignment:
Q  527 gtgccagaattgtatgaaatatatattaagttgtttaaagaaaaggatataattgttaactagtccagtggtttgtttttgcttgaatgcagagcagggg 626  Q
    |||||||||||||||||||||||||||||  ||| | ||  |||    |||| |||||||| ||| ||||||||  ||||||||||  |||||| |||||    
T  48975755 gtgccagaattgtatgaaatatatattaaactgtgtgaaagaaatatcataactgttaactggtctagtggttt-attttgcttgatagcagagtagggg 48975853  T
Q  627 -tgccagtttgaatcc 641  Q
     |||||||||||||||    
T  48975854 atgccagtttgaatcc 48975869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 43317128 - 43317165
Alignment:
Q  162 tgggaaacaactccccattcccatgctaaaccccacct 199  Q
    |||||||||||| | |||||||||||||||||||||||    
T  43317128 tgggaaacaacttctcattcccatgctaaaccccacct 43317165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 41884230 - 41884278
Alignment:
Q  151 ctttcctatagtgggaaacaactccccattcccatgctaaaccccacct 199  Q
    ||||||||| ||||||||||| | ||| || ||||||||||||||||||    
T  41884230 ctttcctatggtgggaaacaatttcccttttccatgctaaaccccacct 41884278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 47334246 - 47334198
Alignment:
Q  151 ctttcctatagtgggaaacaactccccattcccatgctaaaccccacct 199  Q
    |||||| || ||||||||||||||||| || ||| ||||||||||||||    
T  47334246 ctttcccattgtgggaaacaactccccttttccaggctaaaccccacct 47334198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 48835098 - 48835146
Alignment:
Q  151 ctttcctatagtgggaaacaactccccattcccatgctaaaccccacct 199  Q
    |||||| || |||| |||||| ||||| |||||||||||||||||||||    
T  48835098 ctttcccatggtggaaaacaattcccctttcccatgctaaaccccacct 48835146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 162; Significance: 4e-86; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 32870998 - 32871188
Alignment:
Q  8 gtgctggtggtgaagttcatgttgctggtgggtgagtgaggacatggaagagagacaagggtgatggaatagtgtaaaataatatagtattgagagacta 107  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32870998 gtgctggtggtgaagttcatgttgctggcgggtgagtgaggacatggaagagagacaagggtgatggaatagtgtaaaataatatagtattgagagacta 32871097  T
Q  108 tgataatattatgttctttacatgatcaaatggtccnnnnnnnctttcctatagtgggaaacaactccccattcccatgctaaaccccacc 198  Q
    ||||||||||||||||||||||||||||||||||||       ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32871098 tgataatattatgttctttacatgatcaaatggtccaaaaaaactttcctatggtgggaaacaactccccattcccatgctaaaccccacc 32871188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 83 - 142
Target Start/End: Original strand, 36845135 - 36845194
Alignment:
Q  83 aaaataatatagtattgagagactatgataatattatgttctttacatgatcaaatggtc 142  Q
    |||||||| |||| ||||| ||||||||||||||||||||| |||||| ||| |||||||    
T  36845135 aaaataatctagtgttgagggactatgataatattatgttccttacataatctaatggtc 36845194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 42607128 - 42607079
Alignment:
Q  151 ctttcctatagtgggaaacaactccccattcccatgctaaaccccaccta 200  Q
    |||||| || ||||||||||| ||||| ||||||||||||||||||||||    
T  42607128 ctttcccatggtgggaaacaattcccctttcccatgctaaaccccaccta 42607079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 97 - 198
Target Start/End: Complemental strand, 12732348 - 12732247
Alignment:
Q  97 ttgagagactatgataatattatgttctttacatgatcaaatggtccnnnnnnnctttcctatagtgggaaacaactccccattcccatgctaaacccca 196  Q
    ||||||| ||||||||| | |||||||||||||||||| |||||||        |||||| || |||||||||   | ||| ||||||||||||||||||    
T  12732348 ttgagagtctatgataaaactatgttctttacatgatctaatggtcaatatttactttcccatggtgggaaactctttccctttcccatgctaaacccca 12732249  T
Q  197 cc 198  Q
    ||    
T  12732248 cc 12732247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 24995899 - 24995851
Alignment:
Q  151 ctttcctatagtgggaaacaactccccattcccatgctaaaccccacct 199  Q
    |||||| || ||||||||||||||||| ||||||| |||||||||||||    
T  24995899 ctttcccatggtgggaaacaactcccctttcccattctaaaccccacct 24995851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 29060740 - 29060788
Alignment:
Q  151 ctttcctatagtgggaaacaactccccattcccatgctaaaccccacct 199  Q
    |||||| || ||||||||||| ||||| |||||||||||||||||||||    
T  29060740 ctttcccatggtgggaaacaattcccctttcccatgctaaaccccacct 29060788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 6730168 - 6730206
Alignment:
Q  161 gtgggaaacaactccccattcccatgctaaaccccacct 199  Q
    ||||||||||||| ||| |||||||||||||||||||||    
T  6730168 gtgggaaacaacttccctttcccatgctaaaccccacct 6730206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 88 - 122
Target Start/End: Complemental strand, 32870375 - 32870341
Alignment:
Q  88 aatatagtattgagagactatgataatattatgtt 122  Q
    |||||||| ||||||||||||||||||||||||||    
T  32870375 aatatagtgttgagagactatgataatattatgtt 32870341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 40320421 - 40320459
Alignment:
Q  161 gtgggaaacaactccccattcccatgctaaaccccacct 199  Q
    |||||||||||||| || |||||||||||||||||||||    
T  40320421 gtgggaaacaactctcctttcccatgctaaaccccacct 40320459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 5064657 - 5064694
Alignment:
Q  162 tgggaaacaactccccattcccatgctaaaccccacct 199  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  5064657 tgggaaagaacttcccattcccatgctaaaccccacct 5064694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 24996684 - 24996725
Alignment:
Q  151 ctttcctatagtgggaaacaactccccattcccatgctaaac 192  Q
    |||||| || ||||||||||||||||| ||||||||||||||    
T  24996684 ctttcccatggtgggaaacaactcccctttcccatgctaaac 24996725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 36844649 - 36844612
Alignment:
Q  161 gtgggaaacaactccccattcccatgctaaaccccacc 198  Q
    |||||||||||||| || ||||||||||||||||||||    
T  36844649 gtgggaaacaactcacctttcccatgctaaaccccacc 36844612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 42607813 - 42607862
Alignment:
Q  151 ctttcctatagtgggaaacaactccccattcccatgctaaaccccaccta 200  Q
    |||||||||  |||||||||| ||||| || |||||||||||||||||||    
T  42607813 ctttcctatgatgggaaacaattccccttttccatgctaaaccccaccta 42607862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 1e-58; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 8 - 199
Target Start/End: Complemental strand, 7987598 - 7987407
Alignment:
Q  8 gtgctggtggtgaagttcatgttgctggtgggtgagtgaggacatggaagagagacaagggtgatggaatagtgt-aaaataatatagtattgagagact 106  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  7987598 gtgctgatggtgaagttcatgttgctggcgggtgagtgaggacatggaagagagacaagggtgatggaatagtgtaaaaataatatagta-tgagagact 7987500  T
Q  107 atgataatattatgttctttacatgatcaaatggtccnnnnnnnctttcctatagtgggaaacaactccccattcccatgctaaaccccacct 199  Q
    ||||||||||||||||| |||||||||| ||| ||||       |||| ||||  | |||||||||||||| |||||||||||||||||||||    
T  7987499 atgataatattatgttccttacatgatctaatagtccaaaaaaacttttctatgataggaaacaactccccgttcccatgctaaaccccacct 7987407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 542 - 626
Target Start/End: Original strand, 49129101 - 49129184
Alignment:
Q  542 gaaatatatattaagttgtttaaagaaaaggatataattgttaactagtccagtggtttgtttttgcttgaatgcagagcagggg 626  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||    
T  49129101 gaaatatatattaagttgtttcaagaaaaggatataattgttaactggtccagtggtttg-ttttgcttgaatggagagcagggg 49129184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 527 - 598
Target Start/End: Complemental strand, 2178999 - 2178928
Alignment:
Q  527 gtgccagaattgtatgaaatatatattaagttgtttaaagaaaaggatataattgttaactagtccagtggt 598  Q
    |||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||  |||||||||    
T  2178999 gtgccagaattgtatgaaatatatattaagttgtttgaagagaatgatataattgttaactgatccagtggt 2178928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 531 - 596
Target Start/End: Original strand, 6120771 - 6120836
Alignment:
Q  531 cagaattgtatgaaatatatattaagttgtttaaagaaaaggatataattgttaactagtccagtg 596  Q
    ||||||||||||||||||||||||||||| || |||| |||| ||||||| |||||| ||||||||    
T  6120771 cagaattgtatgaaatatatattaagttgcttgaagagaaggttataattattaactggtccagtg 6120836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 39429938 - 39429986
Alignment:
Q  151 ctttcctatagtgggaaacaactccccattcccatgctaaaccccacct 199  Q
    |||||| || |||||||||||||| ||||||||||||||||||||||||    
T  39429938 ctttcccatggtgggaaacaactctccattcccatgctaaaccccacct 39429986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 7988221 - 7988276
Alignment:
Q  88 aatatagtattgagagactatgataatattatgttctttacatgatcaaatggtcc 143  Q
    |||||||| ||||||||||||||||||||||||||| |||| | ||| ||||||||    
T  7988221 aatatagtgttgagagactatgataatattatgttccttacttaatctaatggtcc 7988276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 25970153 - 25970106
Alignment:
Q  151 ctttcctatagtgggaaacaactccccattcccatgctaaaccccacc 198  Q
    |||||| || ||||||||||||||||| ||||||||||||||||||||    
T  25970153 ctttcccatggtgggaaacaactcccctttcccatgctaaaccccacc 25970106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 54453131 - 54453093
Alignment:
Q  162 tgggaaacaactccccattcccatgctaaaccccaccta 200  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  54453131 tgggaaacaacttcccattcccatgctaaaccccaccta 54453093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 20351322 - 20351361
Alignment:
Q  161 gtgggaaacaactccccattcccatgctaaaccccaccta 200  Q
    |||||||||||||| |||||||||| ||||||||||||||    
T  20351322 gtgggaaacaactctccattcccatactaaaccccaccta 20351361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 499 - 625
Target Start/End: Complemental strand, 10890708 - 10890583
Alignment:
Q  499 tggcgaatcgtgaaatattttcttgacagtgccagaattgtatgaaatatatattaagttgtttaaagaaaaggatataattgttaactagtccagtggt 598  Q
    ||||| ||| |||||||||||||||   |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||    
T  10890708 tggcggatcttgaaatattttcttgggggtgccagaattgtatgaaatatatattaagttgtttcaagagaaggatataattgttaactggtccagtggt 10890609  T
Q  599 ttgtttttgcttgaatgcagagcaggg 625  Q
    ||| |||||||||||||||||||||||    
T  10890608 ttg-ttttgcttgaatgcagagcaggg 10890583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 499 - 603
Target Start/End: Original strand, 5572546 - 5572650
Alignment:
Q  499 tggcgaatcgtgaaatattttcttgacagtgccagaattgtatgaaatatatattaagttgtttaaagaaaaggatataattgttaactagtccagtggt 598  Q
    ||||| ||| ||||||||||| |||   |||||| ||||||||||||||||||||||||||||| || | ||||||||||||||||||| ||||||||||    
T  5572546 tggcggatcttgaaatattttattgggggtgccaaaattgtatgaaatatatattaagttgtttgaaaataaggatataattgttaactggtccagtggt 5572645  T
Q  599 ttgtt 603  Q
    |||||    
T  5572646 ttgtt 5572650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 42346117 - 42346158
Alignment:
Q  162 tgggaaacaactccccattcccatgctaaaccccacctaaaa 203  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  42346117 tgggaaacaactctccattcccatgctaaaccccacctaaaa 42346158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 198
Target Start/End: Original strand, 35840531 - 35840578
Alignment:
Q  151 ctttcctatagtgggaaacaactccccattcccatgctaaaccccacc 198  Q
    |||||| || ||||||||||||| ||| ||||||||||||||||||||    
T  35840531 ctttcccatcgtgggaaacaacttccctttcccatgctaaaccccacc 35840578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 37562342 - 37562295
Alignment:
Q  151 ctttcctatagtgggaaacaactccccattcccatgctaaaccccacc 198  Q
    ||||||||| ||||||||||| || || ||||||||||||||||||||    
T  37562342 ctttcctatggtgggaaacaattctcctttcccatgctaaaccccacc 37562295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 35943113 - 35943075
Alignment:
Q  161 gtgggaaacaactccccattcccatgctaaaccccacct 199  Q
    ||||||||||||| ||| |||||||||||||||||||||    
T  35943113 gtgggaaacaacttccctttcccatgctaaaccccacct 35943075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 35839758 - 35839722
Alignment:
Q  162 tgggaaacaactccccattcccatgctaaaccccacc 198  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  35839758 tgggaaacaacttccctttcccatgctaaaccccacc 35839722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 35943847 - 35943887
Alignment:
Q  158 atagtgggaaacaactccccattcccatgctaaaccccacc 198  Q
    |||||||||||||| || || ||||||||||||||||||||    
T  35943847 atagtgggaaacaattctcctttcccatgctaaaccccacc 35943887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 39862903 - 39862951
Alignment:
Q  151 ctttcctatagtgggaaacaactccccattcccatgctaaaccccacct 199  Q
    ||||||||| ||||||||||||  |||||||||| | ||||||||||||    
T  39862903 ctttcctatggtgggaaacaacatcccattcccaggttaaaccccacct 39862951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 42345441 - 42345401
Alignment:
Q  151 ctttcctatagtgggaaacaactccccattcccatgctaaa 191  Q
    |||||| || |||||||||||||| ||||||||||||||||    
T  42345441 ctttcccatggtgggaaacaactctccattcccatgctaaa 42345401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 28886913 - 28886990
Alignment:
Q  9 tgctggtggtgaagttcatgttgctggtgggtgagtgaggacatggaagagagacaagggtgatggaatagtgtaaaa 86  Q
    ||||||||||||| || |||||||||| ||||||||| ||||||||| |||||||||||||||| |||| ||||||||    
T  28886913 tgctggtggtgaaattgatgttgctggcgggtgagtggggacatggaggagagacaagggtgatagaatggtgtaaaa 28886990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 83 - 199
Target Start/End: Original strand, 49161741 - 49161857
Alignment:
Q  83 aaaataatatagtattgagagactatgataatattatgttctttacatgatcaaatggtccnnnnnnnctttcctatagtgggaaacaactccccattcc 182  Q
    |||||||| |||| |||| |||||||||||||||||||||| |||||||||| |||| ||        |||||| || ||||||||||| ||||| ||||    
T  49161741 aaaataatctagtgttgaaagactatgataatattatgttccttacatgatctaatgctcataaaaaactttcccatggtgggaaacaattcccctttcc 49161840  T
Q  183 catgctaaaccccacct 199  Q
    ||||||||||| |||||    
T  49161841 catgctaaacctcacct 49161857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 33455782 - 33455831
Alignment:
Q  151 ctttcctatagtgggaaacaactccccattcccatgctaaaccccaccta 200  Q
    ||||||||| ||||||||||| ||||| ||||||||||||||||||||||    
T  33455782 ctttcctatggtgggaaacaattcccctttcccatgctaaaccccaccta 33455831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 49161021 - 49160985
Alignment:
Q  164 ggaaacaactccccattcccatgctaaaccccaccta 200  Q
    |||||||||||||| ||||||||||||||||||||||    
T  49161021 ggaaacaactcccctttcccatgctaaaccccaccta 49160985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 198
Target Start/End: Original strand, 43768760 - 43768807
Alignment:
Q  151 ctttcctatagtgggaaacaactccccattcccatgctaaaccccacc 198  Q
    |||||| || |||| ||||||||| |||||||||||||||||||||||    
T  43768760 ctttcccatggtggaaaacaactctccattcccatgctaaaccccacc 43768807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 43768073 - 43768033
Alignment:
Q  151 ctttcctatagtgggaaacaactccccattcccatgctaaa 191  Q
    |||||| || |||||||||||||| ||||||||||||||||    
T  43768073 ctttcccatggtgggaaacaactctccattcccatgctaaa 43768033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 51421676 - 51421724
Alignment:
Q  151 ctttcctatagtgggaaacaactccccattcccatgctaaaccccacct 199  Q
    |||||| || ||||||||||| ||||| ||| |||||||||||||||||    
T  51421676 ctttcccatggtgggaaacaattcccctttctcatgctaaaccccacct 51421724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 499 - 600
Target Start/End: Original strand, 32553689 - 32553790
Alignment:
Q  499 tggcgaatcgtgaaatattttcttgacagtgccagaattgtatgaaatatatattaagttgtttaaagaaaaggatataattgttaactagtccagtggt 598  Q
    ||||| ||| |||||||||||||||   ||||||||||||||||||||||||||| ||||||||   || |||||||  |||||||||| ||||||||||    
T  32553689 tggcggatcttgaaatattttcttgggggtgccagaattgtatgaaatatatatttagttgtttcgtgagaaggatactattgttaactggtccagtggt 32553788  T
Q  599 tt 600  Q
    ||    
T  32553789 tt 32553790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 193
Target Start/End: Complemental strand, 23875355 - 23875245
Alignment:
Q  83 aaaataatatagtattgagagactatgataatattatgttctttacatgatcaaatggtccnnnnnnnctttcctatagtgggaaacaactccccattcc 182  Q
    |||||||| |||| |||| |||||||||||||||||||||| |||||||||| |||||||        |||||| ||  || ||||||| ||||| ||||    
T  23875355 aaaataatctagtgttgaaagactatgataatattatgttccttacatgatctaatggtcataaaaaactttcccatgatgcgaaacaattcccctttcc 23875256  T
Q  183 catgctaaacc 193  Q
    |||||||||||    
T  23875255 catgctaaacc 23875245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 6084986 - 6084871
Alignment:
Q  83 aaaataatatagtattgagagactatgataatattatgttctttacatgatcaaatggtccnnnnnnnctttcctatagtgggaaacaactccccattcc 182  Q
    |||||||| |||| |||| |||||||||||||||||||||  |||||||||  |||||||        |||||| ||  |||||||||| ||||| ||||    
T  6084986 aaaataatctagtgttgaaagactatgataatattatgtttcttacatgatttaatggtcataaaaaactttcccatgatgggaaacaattcccctttcc 6084887  T
Q  183 catgctaaaccccacc 198  Q
    |||| |||||| ||||    
T  6084886 catgttaaacctcacc 6084871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 36391004 - 36390954
Alignment:
Q  151 ctttcctatagtgggaaacaactccccattcccatgctaaaccccacctaa 201  Q
    |||||| || ||||||||||||| ||| |||||||||||||||||||||||    
T  36391004 ctttcccatggtgggaaacaacttccctttcccatgctaaaccccacctaa 36390954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 20992020 - 20992068
Alignment:
Q  151 ctttcctatagtgggaaacaactccccattcccatgctaaaccccacct 199  Q
    |||||| || |||| ||||||||| ||||||||||||||||||||||||    
T  20992020 ctttcccatggtggaaaacaactctccattcccatgctaaaccccacct 20992068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 23876064 - 23876112
Alignment:
Q  151 ctttcctatagtgggaaacaactccccattcccatgctaaaccccacct 199  Q
    |||||| || ||||||||||||||||  |||||||||||||||||||||    
T  23876064 ctttcccatggtgggaaacaactcccatttcccatgctaaaccccacct 23876112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 6085702 - 6085751
Alignment:
Q  151 ctttcctatagtgggaaacaactccccattcccatgctaaaccccaccta 200  Q
    |||||| || || ||||||||||| || ||||||||||||||||||||||    
T  6085702 ctttcccatggtaggaaacaactcacctttcccatgctaaaccccaccta 6085751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 7868142 - 7868191
Alignment:
Q  151 ctttcctatagtgggaaacaactccccattcccatgctaaaccccaccta 200  Q
    |||||| || ||||||||||||||||| ||| ||||||||| ||||||||    
T  7868142 ctttcccatggtgggaaacaactcccctttctcatgctaaatcccaccta 7868191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 42650872 - 42650757
Alignment:
Q  83 aaaataatatagtattgagagactatgataatattatgttctttacatgatcaaatggtccnnnnnnnctttcctatagtgggaaacaactccccattcc 182  Q
    |||||||| |||| |||| |||||||||||||||||||||| |||||||||| |||| ||        |||||| || |||  |||||| ||||| ||||    
T  42650872 aaaataatctagtgttgaaagactatgataatattatgttccttacatgatctaatgctcataaaaaactttcccatggtgaaaaacaattcccctttcc 42650773  T
Q  183 catgctaaaccccacc 198  Q
    ||||||||||| ||||    
T  42650772 catgctaaacctcacc 42650757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 9923425 - 9923381
Alignment:
Q  161 gtgggaaacaactccccattcccatgctaaaccccacctaaaact 205  Q
    |||||||||||||| |||||||||||||||||||||||| |||||    
T  9923425 gtgggaaacaactctccattcccatgctaaaccccacctcaaact 9923381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 535 - 627
Target Start/End: Original strand, 26414461 - 26414552
Alignment:
Q  535 attgtatgaaatatatattaagttgtttaaagaaaaggatataattgttaactagtccagtggtttgtttttgcttgaatgcagagcaggggt 627  Q
    |||||||||||||||||| || |||||| ||| |||    ||||||||||||| ||||||||||||  |||||||||| ||||||| ||||||    
T  26414461 attgtatgaaatatatatcaaattgtttgaaggaaatatcataattgttaactggtccagtggttt-attttgcttgattgcagagtaggggt 26414552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 197
Target Start/End: Complemental strand, 4789567 - 4789521
Alignment:
Q  151 ctttcctatagtgggaaacaactccccattcccatgctaaaccccac 197  Q
    |||||| || ||||||||||||||||| |||||||||||||||||||    
T  4789567 ctttcccatggtgggaaacaactcccctttcccatgctaaaccccac 4789521  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 6804928 - 6804890
Alignment:
Q  161 gtgggaaacaactccccattcccatgctaaaccccacct 199  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  6804928 gtgggaaacaactcctctttcccatgctaaaccccacct 6804890  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 1969811 - 1969778
Alignment:
Q  166 aaacaactccccattcccatgctaaaccccacct 199  Q
    ||||||||| ||||||||||||||||||||||||    
T  1969811 aaacaactctccattcccatgctaaaccccacct 1969778  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 1970515 - 1970555
Alignment:
Q  151 ctttcctatagtgggaaacaactccccattcccatgctaaa 191  Q
    |||||| || |||||||||||||| ||||||||||||||||    
T  1970515 ctttcccatggtgggaaacaactctccattcccatgctaaa 1970555  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 527 - 555
Target Start/End: Original strand, 28739702 - 28739730
Alignment:
Q  527 gtgccagaattgtatgaaatatatattaa 555  Q
    |||||||||||||||||||||||||||||    
T  28739702 gtgccagaattgtatgaaatatatattaa 28739730  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 29290170 - 29290123
Alignment:
Q  151 ctttcctatagtgggaaacaactccccattcccatgctaaaccccacc 198  Q
    |||||| || |||||||||||||| ||||| |||||||||||||||||    
T  29290170 ctttcccatggtgggaaacaactctccatttccatgctaaaccccacc 29290123  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 8384029 - 8384066
Alignment:
Q  161 gtgggaaacaactccccattcccatgctaaaccccacc 198  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  8384029 gtgggaaacaactccactttcccatgctaaaccccacc 8384066  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 25067851 - 25067900
Alignment:
Q  151 ctttcctatagtgggaaacaactccccattcccatgctaaaccccaccta 200  Q
    ||||||||| ||||||||||| |  || ||||||||||||||||||||||    
T  25067851 ctttcctatggtgggaaacaaatatcctttcccatgctaaaccccaccta 25067900  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 527 - 555
Target Start/End: Complemental strand, 6956447 - 6956419
Alignment:
Q  527 gtgccagaattgtatgaaatatatattaa 555  Q
    |||||||||||||||||||||||||||||    
T  6956447 gtgccagaattgtatgaaatatatattaa 6956419  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 527 - 555
Target Start/End: Original strand, 23059213 - 23059241
Alignment:
Q  527 gtgccagaattgtatgaaatatatattaa 555  Q
    |||||||||||||||||||||||||||||    
T  23059213 gtgccagaattgtatgaaatatatattaa 23059241  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 28975374 - 28975338
Alignment:
Q  164 ggaaacaactccccattcccatgctaaaccccaccta 200  Q
    ||||||||||| || ||||||||||||||||||||||    
T  28975374 ggaaacaactctcctttcccatgctaaaccccaccta 28975338  T

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Target: scaffold0150 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 14049 - 14012
Alignment:
Q  161 gtgggaaacaactccccattcccatgctaaaccccacc 198  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  14049 gtgggaaacaactcccctttcccatgctaaatcccacc 14012  T

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