View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5525-Insertion-3 (Length: 451)
Name: NF5525-Insertion-3
Description: NF5525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5525-Insertion-3 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 8 - 451
Target Start/End: Original strand, 42875366 - 42875809
Alignment:
| Q |
8 |
tacctttttcttgaataaggatcaaacacaaaaatgtttgccctccccatgaaatacagctttccacagtatgaaaaacttagaagccaatgaggagcaa |
107 |
Q |
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| T |
42875366 |
tacctttttcttgaataaggatcaaacacaaaaatgtttgccctccccatgaaatacagctttccacagtatgaaaaactcagaagccaatgaggagcaa |
42875465 |
T |
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| Q |
108 |
aagcgaagcccttcggaattttcataacaatgtgattccattgcccagtctttgaggagaaaacatcaactttgatctcggacatccttactaaaaagga |
207 |
Q |
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| T |
42875466 |
aagcgaagcccttcggaattttcataacaatgtgattccattgccctgtctttgaggagaaaacatcaactttgatctcggacacccttactaaaaagga |
42875565 |
T |
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| Q |
208 |
cttgatgatcacaactcgaaaattgtgtttatttgaacgacgagcggtcaccttctgcttcggtttgcaaacaaatcccacggcatataaattttcgata |
307 |
Q |
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| T |
42875566 |
cttgatgatcacaactcgaaaattgtgtttatttgaacgacgagcggtcaccttctgcttcggtttgcaaacaaatcccacggcgtataaattttcgata |
42875665 |
T |
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| Q |
308 |
cacgtcaaaggaggagaaggatcaggtatatcgatacgccctttcacaagcggatcataaacataatagccgctaccatatgtgtaccggttgttacaac |
407 |
Q |
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| T |
42875666 |
cacgtcaaaggaggagaaggatcaggtatatcgatacgccctttcacaagcggatcataaacataatagccgctaccatatgtgtaccggttgttacaac |
42875765 |
T |
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| Q |
408 |
acaagaataagccgttggaacaaccgcatatgctgctgccttta |
451 |
Q |
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| T |
42875766 |
acaagaataagccgttggaacaaccgcatatgctgctgccttta |
42875809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 327 - 441
Target Start/End: Complemental strand, 42751258 - 42751144
Alignment:
| Q |
327 |
gatcaggtatatcgatacgccctttcacaagcggatcataaacataatagccgctaccatatgtgtaccggttgttacaacacaagaataagccgttgga |
426 |
Q |
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| T |
42751258 |
gatcaggtatatggatacactctttaacgagtggatcataaacataatagacggtagcacatgtgtcccgattcttagaacacaagaataaaccattgga |
42751159 |
T |
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| Q |
427 |
acaaccgcatatgct |
441 |
Q |
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| T |
42751158 |
acaaccacatatgct |
42751144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 22 - 228
Target Start/End: Original strand, 1049883 - 1050089
Alignment:
| Q |
22 |
ataaggatcaaacacaaaaatgtttgccctccccatgaaatacagctttccacagtatgaaaaacttagaagccaatgaggagcaaaagcgaagcccttc |
121 |
Q |
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| T |
1049883 |
ataaggatcaaacacaaaaatgcttgtcctccccatgaaatacaagcttccaccataggaaaaacttagtagccaatgaggagcaaaagcgaatccatcc |
1049982 |
T |
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| Q |
122 |
ggaattttcataacaatgtgattccattgcccagtctttgaggagaaaacatcaactttgatctcggacatccttactaaaaaggacttgatgatcacaa |
221 |
Q |
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| T |
1049983 |
ggaataatcataacaacgcgtttccatgaccccgtctctgaggagaaaacatataactccatctcgaacaacctttttatgaaggacttaatgatcacaa |
1050082 |
T |
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| Q |
222 |
ctcgaaa |
228 |
Q |
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| T |
1050083 |
ctcgaaa |
1050089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 349 - 437
Target Start/End: Original strand, 1050207 - 1050295
Alignment:
| Q |
349 |
tttcacaagcggatcataaacataatagccgctaccatatgtgtaccggttgttacaacacaagaataagccgttggaacaaccgcata |
437 |
Q |
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| T |
1050207 |
tttcataagtggatcgtaaatataatagtcgataccataggtgtatcgattcttacaacacaagaataaaccgttggaacaaccgcata |
1050295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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