View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5525-Insertion-4 (Length: 408)
Name: NF5525-Insertion-4
Description: NF5525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5525-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 9e-77; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 628892 - 628727
Alignment:
| Q |
14 |
atatatattttgtcactgtcctatcttatactcactaattctctatcatattttttcactatcatatcatgtataccaaacgaatttaagtgttttgaac |
113 |
Q |
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| T |
628892 |
atatatattttgtcactgtcctatcttatattcactagttctctatcatattttttcactatcatatcatatataccaaacgaatttaagtgttttgaac |
628793 |
T |
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| Q |
114 |
ttaataacgtatcaaagttcgtctctatgaactaattatatcatagcatataataatataacacaa |
179 |
Q |
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| T |
628792 |
ttaataacgtatcaaagttcgtctctatgaactaattatatcatagcatataataatgtaaaacaa |
628727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 220 - 408
Target Start/End: Complemental strand, 628733 - 628542
Alignment:
| Q |
220 |
aaaacaaataacatcgttaacaaaccatgatatatataaacctaagcagtttagtaaaattctaactgtatctaacacaatcaagttcatctaaggctcc |
319 |
Q |
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| T |
628733 |
aaaacaaataacatcgttaacaaaccatgatatatataaacctaagcagtttagtaaaattctaagtgtatctaacacaatcaagttcatctaaggctcc |
628634 |
T |
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| Q |
320 |
acccaattaaacaccctttgtcctttgaaatgtttccctt---ttttattcattttgttattnnnnnnntattaggcttttacttttctcat |
408 |
Q |
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| T |
628633 |
acccaattagacaccctttgtcctttgaaatgtttccctttttttttattcattttgttcttaaaaaaatattaggcttttacttttctcat |
628542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 362
Target Start/End: Original strand, 1235586 - 1235720
Alignment:
| Q |
227 |
ataacatcgttaacaaaccatgatatatataaacctaagcagtttagtaaaattctaactgtatctaacacaatcaagttcatctaaggctccacccaat |
326 |
Q |
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| T |
1235586 |
ataacatctttaacaa-ccatgagatatataaatctaagcagtttaacaaaattataattgtatataacagagtcaagtccagctaagagttcactgaat |
1235684 |
T |
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| Q |
327 |
taaacaccctttgtcctttgaaatgtttcccttttt |
362 |
Q |
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| T |
1235685 |
taaacactttctgttctttaaaatgtttcccttttt |
1235720 |
T |
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