View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5525-Insertion-5 (Length: 393)
Name: NF5525-Insertion-5
Description: NF5525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5525-Insertion-5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 8 - 393
Target Start/End: Complemental strand, 37413886 - 37413502
Alignment:
| Q |
8 |
tgtttttgtgtattcactcttaattggaacaataaaagtgtgagtgcatgcattttgaagtttttatt-ctatgaaagagtgcatttggaagtttagaca |
106 |
Q |
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| T |
37413886 |
tgtttttgtgtattcactcctaattggaacaataaaagtgtgagtgcatgcattttgaagtttttttttctatgaaagagtgcatttggaagtttagaca |
37413787 |
T |
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| Q |
107 |
gtaattttgtgctacaacaataaaatacatctttttacgatgatgctctctatctaaatgttgttttatcatggtcacacattaattttgacaaaaacct |
206 |
Q |
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| T |
37413786 |
gtaattttgtgctacaacaataaaatacatctttttacgatgatgctctctatctaaatgttgttttatcatggtcacacattaattttgacaaaaacct |
37413687 |
T |
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| Q |
207 |
atattttttaacagaattatatcgtcaaacctagtgcatattcaaatcttgtatcccaattatattgattttaccgtgatttcaccaagctgcaaatatt |
306 |
Q |
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| T |
37413686 |
atattttttaacagaattatatcgtcaaacctagtgcatattcaaatcttgtatcccaattatattgattttaccgtgatttcaccaagctgcaa--att |
37413589 |
T |
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| Q |
307 |
agagaggtagattgacgcacaccaccttcacggttgaagaataaatttccaacacacacatgtatagattctttttgttcctttctt |
393 |
Q |
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| T |
37413588 |
ggagaggtagattgacgcacaccaccttcacggttgaagaataaatttccaacacacacatgtatagattctttttgttcctttctt |
37413502 |
T |
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