View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5525-Insertion-6 (Length: 255)

Name: NF5525-Insertion-6
Description: NF5525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5525-Insertion-6
NF5525-Insertion-6
[»] chr3 (3 HSPs)
chr3 (8-255)||(42744843-42745090)
chr3 (45-91)||(31337464-31337510)
chr3 (48-113)||(32703077-32703142)
[»] chr4 (9 HSPs)
chr4 (45-112)||(55870404-55870471)
chr4 (47-110)||(54325102-54325165)
chr4 (45-114)||(24443976-24444045)
chr4 (54-114)||(32724057-32724117)
chr4 (45-120)||(22471263-22471338)
chr4 (44-91)||(46013362-46013409)
chr4 (54-111)||(44319891-44319947)
chr4 (48-100)||(927428-927480)
chr4 (47-91)||(53626737-53626781)
[»] chr6 (6 HSPs)
chr6 (49-114)||(3169312-3169377)
chr6 (50-89)||(323774-323813)
chr6 (47-89)||(10154184-10154226)
chr6 (54-111)||(7354145-7354202)
chr6 (45-114)||(10452423-10452492)
chr6 (45-113)||(6310287-6310355)
[»] chr7 (7 HSPs)
chr7 (54-154)||(2767250-2767350)
chr7 (47-114)||(35536045-35536112)
chr7 (7-45)||(5017957-5017995)
chr7 (46-100)||(30456514-30456568)
chr7 (47-111)||(2894758-2894822)
chr7 (48-112)||(5006575-5006639)
chr7 (45-89)||(31338471-31338515)
[»] chr1 (3 HSPs)
chr1 (63-114)||(43029482-43029533)
chr1 (45-100)||(15360846-15360901)
chr1 (64-113)||(23895275-23895324)
[»] chr8 (3 HSPs)
chr8 (47-100)||(4763870-4763923)
chr8 (45-90)||(10727159-10727204)
chr8 (45-114)||(35869775-35869844)
[»] chr5 (7 HSPs)
chr5 (45-114)||(19177417-19177486)
chr5 (45-137)||(14599366-14599460)
chr5 (47-113)||(28586831-28586897)
chr5 (52-114)||(37063144-37063206)
chr5 (54-91)||(985594-985631)
chr5 (47-100)||(14295458-14295511)
chr5 (45-113)||(35135725-35135793)
[»] chr2 (7 HSPs)
chr2 (74-120)||(9833087-9833133)
chr2 (45-91)||(14666509-14666555)
chr2 (49-91)||(29429824-29429866)
chr2 (54-91)||(14209238-14209275)
chr2 (45-114)||(37053532-37053601)
chr2 (70-114)||(12215745-12215789)
chr2 (48-100)||(33192145-33192197)


Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 255
Target Start/End: Complemental strand, 42745090 - 42744843
Alignment:
Q  8 ttttcatcttatttccataagcttttgaagatagcttaacttataacttatgtgaaaacagttcgaatttattttatcttttgtagtagaaatggattat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42745090 ttttcatcttatttccataagcttttgaagatagcttaacttataacttatgtgaaaacagttcgaatttattttatcttttgtagtagaaatggattat 42744991  T
Q  108 acataagtgtttacaatataagcacataattaaactgtttattcaagcagggcctaagtgtttcacagagcgaataaaaatagcttataaagccagtcct 207  Q
    |||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42744990 acataagtgtttacgatataagcacataattaaactgtttactcaaacagggcctaagtgtttcacagagcgaataaaaatagcttataaagccagtcct 42744891  T
Q  208 aatatctgagaggcggaaactaattctgctataagcataccggaatac 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42744890 aatatctgagaggcggaaactaattctgctataagcataccggaatac 42744843  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 31337464 - 31337510
Alignment:
Q  45 aacttataacttatgtgaaaacagttcgaatttattttatcttttgt 91  Q
    |||||||||||||| | ||||||||| || |||||||||||||||||    
T  31337464 aacttataacttatataaaaacagtttgactttattttatcttttgt 31337510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 32703142 - 32703077
Alignment:
Q  48 ttataacttatgtgaaaacagttcgaatttattttatcttttgtagtagaaatggattatacataa 113  Q
    ||||| ||||| |||||||| || || ||||||||||||||| || ||||||| | ||||||||||    
T  32703142 ttatagcttatatgaaaacaatttgagtttattttatcttttataatagaaatagcttatacataa 32703077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 55870404 - 55870471
Alignment:
Q  45 aacttataacttatgtgaaaacagttcgaatttattttatcttttgtagtagaaatggattatacata 112  Q
    |||||||| ||||||||||||||||| || ||||||| |||||||||  || ||||||||||||||||    
T  55870404 aacttatagcttatgtgaaaacagtttgactttatttgatcttttgttataaaaatggattatacata 55870471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 110
Target Start/End: Original strand, 54325102 - 54325165
Alignment:
Q  47 cttataacttatgtgaaaacagttcgaatttattttatcttttgtagtagaaatggattataca 110  Q
    |||||| ||||| ||||||||||| || |||||||||||||||||| ||||||| | |||||||    
T  54325102 cttatagcttatatgaaaacagtttgactttattttatcttttgtaatagaaatagtttataca 54325165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 24444045 - 24443976
Alignment:
Q  45 aacttataacttatgtgaaaacagttcgaatttattttatcttttgtagtagaaatggattatacataag 114  Q
    |||||||| ||||| ||||||  ||| ||||||||||||| |||||| |||||||| | |||||||||||    
T  24444045 aacttatagcttatatgaaaattgtttgaatttattttatattttgttgtagaaatcgcttatacataag 24443976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 32724117 - 32724057
Alignment:
Q  54 cttatgtgaaaacagttcgaatttattttatcttttgtagtagaaatggattatacataag 114  Q
    ||||| |||||| |||| || |||||||||||||||||| ||||||| ||||| |||||||    
T  32724117 cttatatgaaaatagtttgactttattttatcttttgtaatagaaatagattagacataag 32724057  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 22471338 - 22471263
Alignment:
Q  45 aacttataacttatgtgaaaacagttcgaatttattttatcttttgtagtagaaatggattatacataagtgttta 120  Q
    |||||||||||||| ||||||||||| |  |||| |||||||||  |   |||||||| |||||||||||||||||    
T  22471338 aacttataacttatatgaaaacagtttgcctttaatttatctttaattaaagaaatggcttatacataagtgttta 22471263  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 46013362 - 46013409
Alignment:
Q  44 taacttataacttatgtgaaaacagttcgaatttattttatcttttgt 91  Q
    ||||||||||||||| | ||||||||| || |||||||||||||||||    
T  46013362 taacttataacttatataaaaacagtttgactttattttatcttttgt 46013409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 44319947 - 44319891
Alignment:
Q  54 cttatgtgaaaacagttcgaatttattttatcttttgtagtagaaatggattatacat 111  Q
    ||||| |||||||||||||| ||||||||||||||| || ||||||| | ||||||||    
T  44319947 cttatatgaaaacagttcgactttattttatctttttta-tagaaatagtttatacat 44319891  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 927480 - 927428
Alignment:
Q  48 ttataacttatgtgaaaacagttcgaatttattttatcttttgtagtagaaat 100  Q
    ||||| ||||| ||||||||||| || ||||||| |||||||||| |||||||    
T  927480 ttatagcttatatgaaaacagtttgactttatttcatcttttgtattagaaat 927428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 53626781 - 53626737
Alignment:
Q  47 cttataacttatgtgaaaacagttcgaatttattttatcttttgt 91  Q
    |||||| ||||| |||||||| || ||||||||||||||||||||    
T  53626781 cttatagcttatatgaaaacattttgaatttattttatcttttgt 53626737  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 3169312 - 3169377
Alignment:
Q  49 tataacttatgtgaaaacagttcgaatttattttatcttttgtagtagaaatggattatacataag 114  Q
    |||| |||||||||||||||||||||||||||| |||||||||  ||||||| | ||| |||||||    
T  3169312 tatagcttatgtgaaaacagttcgaatttatttcatcttttgttatagaaataggttacacataag 3169377  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 89
Target Start/End: Complemental strand, 323813 - 323774
Alignment:
Q  50 ataacttatgtgaaaacagttcgaatttattttatctttt 89  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  323813 ataacttatatgaaaacagtttgaatttattttatctttt 323774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 10154226 - 10154184
Alignment:
Q  47 cttataacttatgtgaaaacagttcgaatttattttatctttt 89  Q
    |||||||||||| ||||||||||| || |||||||||||||||    
T  10154226 cttataacttatatgaaaacagtttgactttattttatctttt 10154184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 7354202 - 7354145
Alignment:
Q  54 cttatgtgaaaacagttcgaatttattttatcttttgtagtagaaatggattatacat 111  Q
    ||||| |||||| ||||||| |||||||||||||||||  ||||||| | ||||||||    
T  7354202 cttatatgaaaatagttcgattttattttatcttttgttatagaaatagtttatacat 7354145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 10452423 - 10452492
Alignment:
Q  45 aacttataacttatgtgaaaacagttcgaatttattttatcttttgtagtagaaatggattatacataag 114  Q
    |||||||| ||||| |||||| |||| || |||||||||| ||||||  ||||||| | |||||||||||    
T  10452423 aacttatagcttatatgaaaatagtttgattttattttatattttgttatagaaatagcttatacataag 10452492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 6310287 - 6310355
Alignment:
Q  45 aacttataacttatgtgaaaacagttcgaatttattttatcttttgtagtagaaatggattatacataa 113  Q
    |||||||| ||||| |||||||| || || |||| || |||||||||  ||||||| ||||||||||||    
T  6310287 aacttatagcttatatgaaaacaattagactttacttcatcttttgttatagaaattgattatacataa 6310355  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 154
Target Start/End: Original strand, 2767250 - 2767350
Alignment:
Q  54 cttatgtgaaaacagttcgaatttattttatcttttgtagtagaaatggattatacataagtgtttacaatataagcacataattaaactgtttattcaa 153  Q
    |||||||||||||| ||   ||||||||||||||||||  ||||||| |||||||| |||||| | | | ||| ||| | |||||||||| |||||||||    
T  2767250 cttatgtgaaaacaatttatatttattttatcttttgttatagaaatagattatacttaagtgctaatactatgagcccttaattaaactatttattcaa 2767349  T
Q  154 g 154  Q
    |    
T  2767350 g 2767350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 35536112 - 35536045
Alignment:
Q  47 cttataacttatgtgaaaacagttcgaatttattttatcttttgtagtagaaatggattatacataag 114  Q
    |||||||||||| |||||||| || || ||||||||||||| |||  ||||||| | |||||||||||    
T  35536112 cttataacttatatgaaaacaatttgactttattttatcttatgttatagaaatagcttatacataag 35536045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 5017957 - 5017995
Alignment:
Q  7 attttcatcttatttccataagcttttgaagatagctta 45  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  5017957 attttcagcttatttccataagcttttcaagatagctta 5017995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 30456514 - 30456568
Alignment:
Q  46 acttataacttatgtgaaaacagttcgaatttattttatcttttgtagtagaaat 100  Q
    ||||||||||||| |||||||| || || |||||||||||||||||  |||||||    
T  30456514 acttataacttatatgaaaacaatttgactttattttatcttttgttttagaaat 30456568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 2894822 - 2894758
Alignment:
Q  47 cttataacttatgtgaaaacagttcgaatttattttatcttttgtagtagaaatggattatacat 111  Q
    |||||||||||  |||||||||||| | |||| ||||||||||||  ||||||| | ||||||||    
T  2894822 cttataacttacttgaaaacagttcaactttaatttatcttttgttatagaaatagcttatacat 2894758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 5006575 - 5006639
Alignment:
Q  48 ttataacttatgtgaaaacagttcgaatttattttatcttttgtagtagaaatggattatacata 112  Q
    ||||| ||||| ||||||||||| || |||||||||||||||||  ||| ||| | |||||||||    
T  5006575 ttataccttatatgaaaacagtttgactttattttatcttttgttataggaatagcttatacata 5006639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 31338515 - 31338471
Alignment:
Q  45 aacttataacttatgtgaaaacagttcgaatttattttatctttt 89  Q
    |||||||||||||| | ||||||||| || |||||||||||||||    
T  31338515 aacttataacttatataaaaacagtttgactttattttatctttt 31338471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 43029482 - 43029533
Alignment:
Q  63 aaacagttcgaatttattttatcttttgtagtagaaatggattatacataag 114  Q
    |||||||| |||||||||||||||||||| |||||||| | |||||||||||    
T  43029482 aaacagtttgaatttattttatcttttgttgtagaaataggttatacataag 43029533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 15360901 - 15360846
Alignment:
Q  45 aacttataacttatgtgaaaacagttcgaatttattttatcttttgtagtagaaat 100  Q
    |||||||| ||||| ||||||||||| || |||||||||||||||||  |||||||    
T  15360901 aacttatagcttatatgaaaacagtttgactttattttatcttttgttatagaaat 15360846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 23895324 - 23895275
Alignment:
Q  64 aacagttcgaatttattttatcttttgtagtagaaatggattatacataa 113  Q
    ||||||| ||||||||||||||||||||  ||||||| | ||||||||||    
T  23895324 aacagtttgaatttattttatcttttgttatagaaatagcttatacataa 23895275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 4763923 - 4763870
Alignment:
Q  47 cttataacttatgtgaaaacagttcgaatttattttatcttttgtagtagaaat 100  Q
    |||||| ||||||||||||| ||| |||||||||||||||||||| || |||||    
T  4763923 cttatagcttatgtgaaaacggtttgaatttattttatcttttgttgtcgaaat 4763870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 10727204 - 10727159
Alignment:
Q  45 aacttataacttatgtgaaaacagttcgaatttattttatcttttg 90  Q
    ||||||||||||||||||||||| || |||||||||| ||||||||    
T  10727204 aacttataacttatgtgaaaacactttgaatttatttcatcttttg 10727159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 35869844 - 35869775
Alignment:
Q  45 aacttataacttatgtgaaaacagttcgaatttattttatcttttgtagtagaaatggattatacataag 114  Q
    |||||||| ||||| ||||||  ||| ||||||||||||| |||||| |||||||| | |||||||||||    
T  35869844 aacttatagcttatatgaaaattgtttgaatttattttatattttgttgtagaaatcgcttatacataag 35869775  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 19177486 - 19177417
Alignment:
Q  45 aacttataacttatgtgaaaacagttcgaatttattttatcttttgtagtagaaatggattatacataag 114  Q
    |||||||| ||||| ||||||||||| || || |||||||||| ||| |||||||| | |||||||||||    
T  19177486 aacttatagcttatatgaaaacagttagacttaattttatcttctgttgtagaaatagtttatacataag 19177417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 137
Target Start/End: Original strand, 14599366 - 14599460
Alignment:
Q  45 aacttataacttatgtgaaaacagttcgaatttattttatc--ttttgtagtagaaatggattatacataagtgtttacaatataagcacataat 137  Q
    |||||||||||||| ||||||||||| || || ||||||||  ||||||  ||||||| | ||| |||||||||||||   ||||||||| ||||    
T  14599366 aacttataacttatatgaaaacagtttgacttaattttatcagttttgttatagaaatagcttaaacataagtgtttatgctataagcacttaat 14599460  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 28586831 - 28586897
Alignment:
Q  47 cttataacttatgtgaaaacagttcgaatttattttatcttttgtagtagaaatggattatacataa 113  Q
    ||||||| |||| ||||||||||| || |||||||||||||||||  ||||||| |  |||||||||    
T  28586831 cttataatttatatgaaaacagtttgactttattttatcttttgttatagaaatagtgtatacataa 28586897  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 37063144 - 37063206
Alignment:
Q  52 aacttatgtgaaaacagttcgaatttattttatcttttgtagtagaaatggattatacataag 114  Q
    ||||||| |||||| |||| || |||||||||||||||||  ||||||| | |||||||||||    
T  37063144 aacttatatgaaaatagtttgactttattttatcttttgttatagaaatagtttatacataag 37063206  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 985631 - 985594
Alignment:
Q  54 cttatgtgaaaacagttcgaatttattttatcttttgt 91  Q
    ||||||||||||||||| || |||||||||||||||||    
T  985631 cttatgtgaaaacagtttgactttattttatcttttgt 985594  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 14295511 - 14295458
Alignment:
Q  47 cttataacttatgtgaaaacagttcgaatttattttatcttttgtagtagaaat 100  Q
    |||||| ||||| ||||||||||| || |||||||||||||||||  |||||||    
T  14295511 cttatagcttatatgaaaacagtttgactttattttatcttttgttatagaaat 14295458  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 35135725 - 35135793
Alignment:
Q  45 aacttataacttatgtgaaaacagttcgaatttattttatcttttgtagtagaaatggattatacataa 113  Q
    |||||||| ||||| |||||| |||| || |||||||||||||||||  |||||||   ||||||||||    
T  35135725 aacttatagcttatatgaaaatagtttgactttattttatcttttgttatagaaatatcttatacataa 35135793  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 9833133 - 9833087
Alignment:
Q  74 atttattttatcttttgtagtagaaatggattatacataagtgttta 120  Q
    ||||||||||||||||||  | ||||| |||||||||||||||||||    
T  9833133 atttattttatcttttgttatggaaatagattatacataagtgttta 9833087  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 14666555 - 14666509
Alignment:
Q  45 aacttataacttatgtgaaaacagttcgaatttattttatcttttgt 91  Q
    |||||||||||||| ||||| ||||| || |||||||||||||||||    
T  14666555 aacttataacttatatgaaatcagtttgactttattttatcttttgt 14666509  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 91
Target Start/End: Original strand, 29429824 - 29429866
Alignment:
Q  49 tataacttatgtgaaaacagttcgaatttattttatcttttgt 91  Q
    |||| ||||||||||||||||| || |||||||||||||||||    
T  29429824 tatagcttatgtgaaaacagtttgactttattttatcttttgt 29429866  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 14209275 - 14209238
Alignment:
Q  54 cttatgtgaaaacagttcgaatttattttatcttttgt 91  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  14209275 cttatatgaaaacagtttgaatttattttatcttttgt 14209238  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 37053601 - 37053532
Alignment:
Q  45 aacttataacttatgtgaaaacagttcgaatttattttatcttttgtagtagaaatggattatacataag 114  Q
    |||||||||||||| ||||||||||| || |||||||||| || |||  ||||||| |  ||||||||||    
T  37053601 aacttataacttatatgaaaacagtttgactttattttattttctgttatagaaatagtctatacataag 37053532  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 12215789 - 12215745
Alignment:
Q  70 tcgaatttattttatcttttgtagtagaaatggattatacataag 114  Q
    |||| ||||||||||||||||| |||||||| | |||||||||||    
T  12215789 tcgactttattttatcttttgttgtagaaatagtttatacataag 12215745  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 33192197 - 33192145
Alignment:
Q  48 ttataacttatgtgaaaacagttcgaatttattttatcttttgtagtagaaat 100  Q
    ||||||||||| ||||||||||| || ||||||||||||| |||  |||||||    
T  33192197 ttataacttatatgaaaacagtttgactttattttatcttatgttatagaaat 33192145  T

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