View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5525_high_1 (Length: 239)

Name: NF5525_high_1
Description: NF5525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5525_high_1
NF5525_high_1
[»] chr3 (10 HSPs)
chr3 (18-238)||(42745086-42745306)
chr3 (18-57)||(36200144-36200183)
chr3 (18-87)||(43115104-43115173)
chr3 (29-107)||(49465598-49465676)
chr3 (18-67)||(45541619-45541668)
chr3 (18-63)||(54837011-54837056)
chr3 (18-50)||(3044249-3044281)
chr3 (18-50)||(21754765-21754797)
chr3 (18-50)||(37273182-37273214)
chr3 (18-50)||(41724260-41724292)
[»] chr4 (4 HSPs)
chr4 (18-81)||(1137760-1137823)
chr4 (22-67)||(46401316-46401361)
chr4 (18-87)||(19304974-19305043)
chr4 (19-107)||(28615384-28615471)
[»] chr1 (15 HSPs)
chr1 (18-93)||(10199355-10199430)
chr1 (25-93)||(18327093-18327161)
chr1 (27-87)||(43338173-43338233)
chr1 (19-50)||(2234787-2234818)
chr1 (18-93)||(14256733-14256808)
chr1 (21-87)||(3224474-3224540)
chr1 (18-48)||(46252674-46252704)
chr1 (18-51)||(3070079-3070112)
chr1 (18-87)||(6292541-6292609)
chr1 (18-50)||(3223715-3223747)
chr1 (18-46)||(5276341-5276369)
chr1 (18-50)||(26185559-26185591)
chr1 (18-50)||(38170680-38170712)
chr1 (18-50)||(42397773-42397805)
chr1 (18-46)||(47917284-47917312)
[»] chr2 (11 HSPs)
chr2 (18-92)||(12313121-12313195)
chr2 (16-87)||(8017480-8017551)
chr2 (19-50)||(41809235-41809266)
chr2 (18-64)||(14666596-14666642)
chr2 (26-87)||(1801724-1801785)
chr2 (18-63)||(44606087-44606132)
chr2 (18-50)||(1056119-1056151)
chr2 (18-50)||(9878672-9878704)
chr2 (18-50)||(30538163-30538195)
chr2 (18-50)||(32614938-32614970)
chr2 (18-46)||(43910993-43911021)
[»] chr6 (11 HSPs)
chr6 (18-87)||(33080531-33080600)
chr6 (18-107)||(33887878-33887967)
chr6 (18-50)||(2112248-2112280)
chr6 (18-82)||(7931684-7931748)
chr6 (26-87)||(27595520-27595581)
chr6 (26-87)||(27693392-27693453)
chr6 (18-50)||(740876-740908)
chr6 (18-50)||(4080964-4080996)
chr6 (18-46)||(6536995-6537023)
chr6 (18-50)||(30863294-30863326)
chr6 (18-50)||(34403903-34403935)
[»] chr8 (6 HSPs)
chr8 (18-50)||(779051-779083)
chr8 (18-50)||(2594987-2595019)
chr8 (18-86)||(4390261-4390329)
chr8 (18-105)||(13000359-13000446)
chr8 (18-50)||(4281594-4281626)
chr8 (18-50)||(8629504-8629536)
[»] chr7 (6 HSPs)
chr7 (19-87)||(36537957-36538025)
chr7 (18-53)||(1645687-1645722)
chr7 (18-50)||(8341876-8341908)
chr7 (18-50)||(9423584-9423616)
chr7 (18-50)||(11048075-11048107)
chr7 (18-50)||(20888384-20888416)
[»] chr5 (4 HSPs)
chr5 (18-86)||(11700332-11700400)
chr5 (18-92)||(17258831-17258905)
chr5 (18-83)||(10125675-10125740)
chr5 (18-50)||(34205289-34205321)
[»] scaffold0147 (1 HSPs)
scaffold0147 (18-50)||(12694-12726)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 42745086 - 42745306
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgtttacaaaaattcttctaaataatgtcacaagtgcttatgatagtaagtaaacttaaatagtctataatc 117  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42745086 gaaaacaacttatgaacatgtcataagttgtttacataaattcttctaaataatatcacaagtgcttatgatagtaagtaaacttaaatagtctataatc 42745185  T
Q  118 cagacagactcttaaacaaatgcatatattgtgaaacttacatagagctaatagaaataatttgtgaaatgaccataagaacacaatgcatttccaatat 217  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42745186 caaacagactcttaaacaaatgcatatattgtgaaacttacatagagctaatagaaataatttgtgaaatgaccataagaacacaatgcatttccaatat 42745285  T
Q  218 tagttcagtcttatggttatg 238  Q
    |||||| ||||||||||||||    
T  42745286 tagttctgtcttatggttatg 42745306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 36200144 - 36200183
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgtttacaaaaa 57  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  36200144 gaaaacaacttatggacatgtcataagttgtttacaaaaa 36200183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 43115104 - 43115173
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgtttacaaaaattcttctaaataatgtcacaagtgcttatg 87  Q
    |||||||| ||||| |||||||||||||||||| || ||| ||||| ||| ||| ||||||||| |||||    
T  43115104 gaaaacaagttatggacatgtcataagttgtttccataaactcttccaaacaatctcacaagtgattatg 43115173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 49465676 - 49465598
Alignment:
Q  29 atgaacatgtcataagttgtttacaaaaattcttctaaataatgtcacaagtgcttatgatagtaagtaaacttaaata 107  Q
    |||||||||| ||||| ||||| || || |||| | ||| ||| ||||||||||||||| |||||| |||||| |||||    
T  49465676 atgaacatgtaataagctgttttcataagttctccgaaacaatatcacaagtgcttatggtagtaaataaactgaaata 49465598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 45541619 - 45541668
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgtttacaaaaattcttctaaa 67  Q
    ||||||| ||||||||||||||||||| ||||| || || ||||||||||    
T  45541619 gaaaacagcttatgaacatgtcataagctgttttcataagttcttctaaa 45541668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 54837056 - 54837011
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgtttacaaaaattcttc 63  Q
    |||||||| |||||||||||||||||| ||||| || |||||||||    
T  54837056 gaaaacaagttatgaacatgtcataagctgttttcataaattcttc 54837011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 3044281 - 3044249
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgttt 50  Q
    ||||||| |||||||||||||||||||||||||    
T  3044281 gaaaacagcttatgaacatgtcataagttgttt 3044249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 21754765 - 21754797
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgttt 50  Q
    |||||||||| ||||||||||||||||||||||    
T  21754765 gaaaacaactgatgaacatgtcataagttgttt 21754797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 37273182 - 37273214
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgttt 50  Q
    |||||||||||||| ||||||||||||||||||    
T  37273182 gaaaacaacttatggacatgtcataagttgttt 37273214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 41724260 - 41724292
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgttt 50  Q
    |||||||||||||| ||||||||||||||||||    
T  41724260 gaaaacaacttatggacatgtcataagttgttt 41724292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 1137760 - 1137823
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgtttacaaaaattcttctaaataatgtcacaagtg 81  Q
    ||||||||||||||||||||||||||| ||||| || || |||| ||||| | |||||||||||    
T  1137760 gaaaacaacttatgaacatgtcataagatgttttcataagttctcctaaacagtgtcacaagtg 1137823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 46401316 - 46401361
Alignment:
Q  22 acaacttatgaacatgtcataagttgtttacaaaaattcttctaaa 67  Q
    ||||||||||||||||||||||||||| |||| ||||||| |||||    
T  46401316 acaacttatgaacatgtcataagttgtgtacataaattctcctaaa 46401361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 19304974 - 19305043
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgtttacaaaaattcttctaaataatgtcacaagtgcttatg 87  Q
    |||||||||||||| |||||||||||| ||||| || ||||||| | | | ||| |||||| ||||||||    
T  19304974 gaaaacaacttatggacatgtcataagctgtttccacaaattctcccacacaatctcacaaatgcttatg 19305043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 28615384 - 28615471
Alignment:
Q  19 aaaacaacttatgaacatgtcataagttgtttacaaaaattcttctaaataatgtcacaagtgcttatgatagtaagtaaacttaaata 107  Q
    ||||||||||||||| ||||||| || ||||| || || ||| || ||| ||| ||||||||| ||||| |||||  ||||||||||||    
T  28615384 aaaacaacttatgaaaatgtcattagctgttttcataagttc-tccaaacaatctcacaagtgtttatgctagtagataaacttaaata 28615471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 10199430 - 10199355
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgtttacaaaaattcttctaaataatgtcacaagtgcttatgatagta 93  Q
    ||||||||||||||||||||||||||| | ||| ||  | |||| | ||||| ||||||||||||||||| |||||    
T  10199430 gaaaacaacttatgaacatgtcataagctattttcatgagttctcccaaatagtgtcacaagtgcttatgttagta 10199355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 18327161 - 18327093
Alignment:
Q  25 acttatgaacatgtcataagttgtttacaaaaattcttctaaataatgtcacaagtgcttatgatagta 93  Q
    |||||| | ||||||||||||||||| || || |||||| ||||| ||||| |||||||||||| ||||    
T  18327161 acttataaccatgtcataagttgttttcataagttcttccaaatagtgtcaaaagtgcttatgacagta 18327093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 43338173 - 43338233
Alignment:
Q  27 ttatgaacatgtcataagttgtttacaaaaattcttctaaataatgtcacaagtgcttatg 87  Q
    |||||||||||||||||| ||||| || || |||||||||||||| | |||| ||||||||    
T  43338173 ttatgaacatgtcataagctgtttccataagttcttctaaataatcttacaaatgcttatg 43338233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 50
Target Start/End: Original strand, 2234787 - 2234818
Alignment:
Q  19 aaaacaacttatgaacatgtcataagttgttt 50  Q
    ||||||||||||||||||||||||||||||||    
T  2234787 aaaacaacttatgaacatgtcataagttgttt 2234818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 14256808 - 14256733
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgtttacaaaaattcttctaaataatgtcacaagtgcttatgatagta 93  Q
    ||||||||||||||| |||||| ||||||||||  | || || ||||||||| || ||||||| |||||| |||||    
T  14256808 gaaaacaacttatgaccatgtcctaagttgtttttataagtttttctaaatagtgccacaagttcttatgctagta 14256733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 3224474 - 3224540
Alignment:
Q  21 aacaacttatgaacatgtcataagttgtttacaaaaattcttctaaataatgtcacaagtgcttatg 87  Q
    ||||||||||| ||||||||||||| ||||  | |||||||   ||||| |||||||||||||||||    
T  3224474 aacaacttatggacatgtcataagtagtttgtataaattctctcaaatagtgtcacaagtgcttatg 3224540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 46252704 - 46252674
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgt 48  Q
    |||||||||||||||||||||||||||||||    
T  46252704 gaaaacaacttatgaacatgtcataagttgt 46252674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 3070112 - 3070079
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgttta 51  Q
    ||||||| ||||||||||||||||||||||||||    
T  3070112 gaaaacagcttatgaacatgtcataagttgttta 3070079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 6292541 - 6292609
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgtttacaaaaattcttctaaataatgtcacaagtgcttatg 87  Q
    ||||||| ||||||||||||||||||| |||||  ||||||||| | ||| ||| ||| |||||||||||    
T  6292541 gaaaacagcttatgaacatgtcataagctgttt-taaaaattctcccaaacaatctcaaaagtgcttatg 6292609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 3223715 - 3223747
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgttt 50  Q
    ||||||||||||| |||||||||||||||||||    
T  3223715 gaaaacaacttataaacatgtcataagttgttt 3223747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 5276341 - 5276369
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagtt 46  Q
    |||||||||||||||||||||||||||||    
T  5276341 gaaaacaacttatgaacatgtcataagtt 5276369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 26185559 - 26185591
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgttt 50  Q
    |||||||||||||| ||||||||||||||||||    
T  26185559 gaaaacaacttatgcacatgtcataagttgttt 26185591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 38170712 - 38170680
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgttt 50  Q
    ||||||||||||||||||||||||||| |||||    
T  38170712 gaaaacaacttatgaacatgtcataagctgttt 38170680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 42397773 - 42397805
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgttt 50  Q
    |||||||||||||||||||| ||||||||||||    
T  42397773 gaaaacaacttatgaacatgccataagttgttt 42397805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 47917284 - 47917312
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagtt 46  Q
    |||||||||||||||||||||||||||||    
T  47917284 gaaaacaacttatgaacatgtcataagtt 47917312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 12313195 - 12313121
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgtttacaaaaattcttctaaataatgtcacaagtgcttatgatagt 92  Q
    |||| ||||||||||||||| |||||| ||||| || ||||||| | ||| ||| ||||||||||||||| ||||    
T  12313195 gaaatcaacttatgaacatggcataagctgttttcataaattctcccaaacaatctcacaagtgcttatgctagt 12313121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 8017480 - 8017551
Alignment:
Q  16 cagaaaacaacttatgaacatgtcataagttgtttacaaaaattcttctaaataatgtcacaagtgcttatg 87  Q
    |||||||||| |||||||||| ||||||| ||||| || || |||| | |||||||  ||||||||||||||    
T  8017480 cagaaaacaaattatgaacatatcataagctgttttcataagttctcccaaataatcgcacaagtgcttatg 8017551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 50
Target Start/End: Complemental strand, 41809266 - 41809235
Alignment:
Q  19 aaaacaacttatgaacatgtcataagttgttt 50  Q
    ||||||||||||||||||||||||||||||||    
T  41809266 aaaacaacttatgaacatgtcataagttgttt 41809235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 14666596 - 14666642
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgtttacaaaaattcttct 64  Q
    ||||||||| ||||||||||||||||||||||| || | ||||||||    
T  14666596 gaaaacaacctatgaacatgtcataagttgtttccatatattcttct 14666642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 1801724 - 1801785
Alignment:
Q  26 cttatgaacatgtcataagttgtttacaaaaattcttctaaataatgtcacaagtgcttatg 87  Q
    ||||||||||||||||||| ||||| || || |||| | ||| ||| |||||||||||||||    
T  1801724 cttatgaacatgtcataagctgttttcataagttctcccaaacaatatcacaagtgcttatg 1801785  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 44606132 - 44606087
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgtttacaaaaattcttc 63  Q
    |||||||||||||| |||||||||||||||||| || || ||||||    
T  44606132 gaaaacaacttatggacatgtcataagttgttttcataagttcttc 44606087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 1056151 - 1056119
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgttt 50  Q
    |||||||||| ||||||||||||||||||||||    
T  1056151 gaaaacaactaatgaacatgtcataagttgttt 1056119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 9878704 - 9878672
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgttt 50  Q
    |||||||||||||| ||||||||||||||||||    
T  9878704 gaaaacaacttatggacatgtcataagttgttt 9878672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 30538195 - 30538163
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgttt 50  Q
    |||||||||||||| ||||||||||||||||||    
T  30538195 gaaaacaacttatggacatgtcataagttgttt 30538163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 32614970 - 32614938
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgttt 50  Q
    ||||||||| |||||||||||||||||||||||    
T  32614970 gaaaacaacatatgaacatgtcataagttgttt 32614938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 43911021 - 43910993
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagtt 46  Q
    |||||||||||||||||||||||||||||    
T  43911021 gaaaacaacttatgaacatgtcataagtt 43910993  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 33080600 - 33080531
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgtttacaaaaattcttctaaataatgtcacaagtgcttatg 87  Q
    ||||| ||||||| |||||||||||||||| || || |||||||  |||| ||| |||||||||||||||    
T  33080600 gaaaataacttataaacatgtcataagttggtttcagaaattctattaaacaatctcacaagtgcttatg 33080531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 33887878 - 33887967
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgtttacaaaaattcttctaaataatgtcacaagtgcttatgatagtaagtaaacttaaata 107  Q
    ||||||||||| ||||||||||||||| | ||| || |||||||   ||| ||||||||||||||| |||  ||||| |||||| |||||    
T  33887878 gaaaacaacttgtgaacatgtcataagctattttcataaattctctcaaacaatgtcacaagtgctaatgtcagtaaataaactcaaata 33887967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 2112248 - 2112280
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgttt 50  Q
    |||||||||||||||||||||||||||||||||    
T  2112248 gaaaacaacttatgaacatgtcataagttgttt 2112280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 7931748 - 7931684
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgtttacaaaaattcttctaaataatgtcacaagtgc 82  Q
    |||||||||||| |||||||||||||||||||| || ||  ||||||||||  | ||||||||||    
T  7931748 gaaaacaacttaagaacatgtcataagttgttttcataagctcttctaaatggtctcacaagtgc 7931684  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 27595581 - 27595520
Alignment:
Q  26 cttatgaacatgtcataagttgtttacaaaaattcttctaaataatgtcacaagtgcttatg 87  Q
    ||||||||||||||||||||||||| || ||||||| | ||| | | ||| |||||||||||    
T  27595581 cttatgaacatgtcataagttgtttccataaattctcccaaacagtctcataagtgcttatg 27595520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 27693453 - 27693392
Alignment:
Q  26 cttatgaacatgtcataagttgtttacaaaaattcttctaaataatgtcacaagtgcttatg 87  Q
    ||||||||||||||||||||||||| || |||||||   ||||| | |||||||| ||||||    
T  27693453 cttatgaacatgtcataagttgtttccataaattctctcaaatagtctcacaagtacttatg 27693392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 740908 - 740876
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgttt 50  Q
    ||||| |||||||||||||||||||||||||||    
T  740908 gaaaataacttatgaacatgtcataagttgttt 740876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 4080964 - 4080996
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgttt 50  Q
    |||||||||||||||||||| ||||||||||||    
T  4080964 gaaaacaacttatgaacatggcataagttgttt 4080996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 6536995 - 6537023
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagtt 46  Q
    |||||||||||||||||||||||||||||    
T  6536995 gaaaacaacttatgaacatgtcataagtt 6537023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 30863294 - 30863326
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgttt 50  Q
    |||||||||||||| ||||||||||||||||||    
T  30863294 gaaaacaacttatgtacatgtcataagttgttt 30863326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 34403903 - 34403935
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgttt 50  Q
    ||||||| |||||||||||||||||||||||||    
T  34403903 gaaaacaccttatgaacatgtcataagttgttt 34403935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 779083 - 779051
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgttt 50  Q
    |||||||||||||||||||||||||||||||||    
T  779083 gaaaacaacttatgaacatgtcataagttgttt 779051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 2595019 - 2594987
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgttt 50  Q
    |||||||||||||||||||||||||||||||||    
T  2595019 gaaaacaacttatgaacatgtcataagttgttt 2594987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 4390261 - 4390329
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgtttacaaaaattcttctaaataatgtcacaagtgcttat 86  Q
    |||||||||||||||||||| |||||||||||| || ||||||| ||| | | ||||| |||| |||||    
T  4390261 gaaaacaacttatgaacatgccataagttgttttcataaattctcctagacactgtcataagtacttat 4390329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 13000446 - 13000359
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgtttacaaaaattcttctaaataatgtcacaagtgcttatgatagtaagtaaacttaaa 105  Q
    ||||||||||| || |||||||||||||||||  || ||| ||||  ||||| | |||||||||||||||  |||| |||| ||||||    
T  13000446 gaaaacaacttgtggacatgtcataagttgttaccataaactcttgcaaatagtctcacaagtgcttatgccagtaggtaagcttaaa 13000359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 4281594 - 4281626
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgttt 50  Q
    ||||||||||||||||||||||||| |||||||    
T  4281594 gaaaacaacttatgaacatgtcatatgttgttt 4281626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 8629504 - 8629536
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgttt 50  Q
    ||||||||||||||| |||||||||||||||||    
T  8629504 gaaaacaacttatgatcatgtcataagttgttt 8629536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 36537957 - 36538025
Alignment:
Q  19 aaaacaacttatgaacatgtcataagttgtttacaaaaattcttctaaataatgtcacaagtgcttatg 87  Q
    |||||||||||||||||||||||||||||||| || || ||||   ||| ||| ||||||||| |||||    
T  36537957 aaaacaacttatgaacatgtcataagttgtttccataagttctctcaaacaatctcacaagtgtttatg 36538025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 1645722 - 1645687
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgtttaca 53  Q
    ||||||||||||| ||||||||||||||||||||||    
T  1645722 gaaaacaacttataaacatgtcataagttgtttaca 1645687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 8341876 - 8341908
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgttt 50  Q
    |||||||||||||| ||||||||||||||||||    
T  8341876 gaaaacaacttatggacatgtcataagttgttt 8341908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 9423616 - 9423584
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgttt 50  Q
    |||||||||||||||||||||||||| ||||||    
T  9423616 gaaaacaacttatgaacatgtcataaattgttt 9423584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 11048075 - 11048107
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgttt 50  Q
    ||||||| |||||||||||||||||||||||||    
T  11048075 gaaaacagcttatgaacatgtcataagttgttt 11048107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 20888416 - 20888384
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgttt 50  Q
    |||||||||||||||||||| ||||||||||||    
T  20888416 gaaaacaacttatgaacatggcataagttgttt 20888384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 11700400 - 11700332
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgtttacaaaaattcttctaaataatgtcacaagtgcttat 86  Q
    ||||||| |||||| |||||||||||||||||| || ||| ||| || |||| | ||||||||||||||    
T  11700400 gaaaacagcttatggacatgtcataagttgtttccataaactctcctcaatagtctcacaagtgcttat 11700332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 17258905 - 17258831
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgtttacaaaaattcttctaaataatgtcacaagtgcttatgatagt 92  Q
    ||||||| ||||||||||||||||||| | ||| || |  |||| | ||| ||||||||||||||||||| ||||    
T  17258905 gaaaacagcttatgaacatgtcataagctattttcataggttctcccaaagaatgtcacaagtgcttatgttagt 17258831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 10125740 - 10125675
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgtttacaaaaattcttctaaataatgtcacaagtgct 83  Q
    ||||||| ||||| |||||||||||||||||||||| || ||||   | | |||||||||||||||    
T  10125740 gaaaacaccttatcaacatgtcataagttgtttacataagttctctcagacaatgtcacaagtgct 10125675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 34205289 - 34205321
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgttt 50  Q
    |||||||||||||||||||| ||||||||||||    
T  34205289 gaaaacaacttatgaacatgacataagttgttt 34205321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 12726 - 12694
Alignment:
Q  18 gaaaacaacttatgaacatgtcataagttgttt 50  Q
    |||||||||||||| ||||||||||||||||||    
T  12726 gaaaacaacttatggacatgtcataagttgttt 12694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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