View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5527-Insertion-2 (Length: 553)
Name: NF5527-Insertion-2
Description: NF5527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5527-Insertion-2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 308 - 553
Target Start/End: Complemental strand, 3530381 - 3530137
Alignment:
| Q |
308 |
attgatgaaaaagaggtataaatatgaatgtggaaagaggaagaaaagtatgcatcttcactgtactttgcatatatttctccgcctagatttagtttgg |
407 |
Q |
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| T |
3530381 |
attgatgaaaaagaggtataaatatgaatgtggaaagaggaagaaaagtatgcatcttcactgtactttgcatatatttctccgcctagatttagtttgg |
3530282 |
T |
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| Q |
408 |
tactgactttccagcaaaactggaaatgtgattaaaaaatatggaagtgtcttgaagctgttattgacgtcttaatgtgtgtttgtttggttgggtagtt |
507 |
Q |
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| T |
3530281 |
tactgactttccagcaaaactggaaatgtgattaaaaaatatggaagtgtcttgacgctgttattgacgtcttaatgtgtgtttgtttggttgggtagtt |
3530182 |
T |
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| Q |
508 |
gggatgattcacctaactaaaaaacaaacactattacttttcccac |
553 |
Q |
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| T |
3530181 |
gggatgattcacctaactaaaaaacaaagac-attacttttcccac |
3530137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 59 - 262
Target Start/End: Complemental strand, 3530630 - 3530427
Alignment:
| Q |
59 |
ggacgtaacacttgttccattgtagaacaacaagaaatctgagaaatggattttgtccaattcttcatctttgatgcnnnnnnncagttttttcttggat |
158 |
Q |
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| T |
3530630 |
ggacgtaacacttgttccattgtagaacaacaagaaatctgagaaatggattttgtccaattcttcatctttgatgcaaaaaaacagttttttcttggat |
3530531 |
T |
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| Q |
159 |
ttgaagaaaaagaaccaagaaaggacaaggatttgaactgatctaaagaaaaagtttccattgttaatattgttgacaattaacaacaataacacaagac |
258 |
Q |
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| T |
3530530 |
ttgaagaaaaagaaccaagaaaggacaaggatttgaactgatctatagaaaaagtttccattgttaatattgttgacaattaacaacaataacacaagac |
3530431 |
T |
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| Q |
259 |
acaa |
262 |
Q |
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| T |
3530430 |
acaa |
3530427 |
T |
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