View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5527-Insertion-3 (Length: 135)
Name: NF5527-Insertion-3
Description: NF5527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5527-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 107; Significance: 5e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 5e-54
Query Start/End: Original strand, 8 - 134
Target Start/End: Original strand, 18194353 - 18194479
Alignment:
| Q |
8 |
catatagtgtacaagttacattgctggtacatttgcagcatgtcaagcaatctggcttgacaatgtgatgaaggaactgaactgtgaagtaaagaaacca |
107 |
Q |
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| T |
18194353 |
catatggtgtacaagttacattgctggtacatttgcaacatgtcaatcaatctggcttgacaatgtgatgaaggaactgcattgtgaagtaaagaaacca |
18194452 |
T |
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| Q |
108 |
ctgaagctgaagattgacaacagatca |
134 |
Q |
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| T |
18194453 |
ctgaagctgaagattgacaacagatca |
18194479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 1183145 - 1183219
Alignment:
| Q |
24 |
tacattgctggtacatttgcagcatgtcaagcaatctggcttgacaatgtgatgaaggaactgaactgtgaagta |
98 |
Q |
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| T |
1183145 |
tacatagcaggtacatttgcagcttgtcaagcaatttggctggatacagtgatgaaagagctaaactgtgaagta |
1183219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 1e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 12371019 - 12371122
Alignment:
| Q |
24 |
tacattgctggtacatttgcagcatgtcaagcaatctggcttgacaatgtgatgaaggaactgaactgtgaagtaaagaaaccactgaagctgaagattg |
123 |
Q |
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| T |
12371019 |
tacattgctggtacatttggagcatgtcaagcaatctggcttgacaatgtgatgaaggatttgaattgtgaagtaaagaaaccactgaagctgaagattg |
12371118 |
T |
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| Q |
124 |
acaa |
127 |
Q |
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|||| |
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| T |
12371119 |
acaa |
12371122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 4e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 4e-42
Query Start/End: Original strand, 24 - 134
Target Start/End: Original strand, 26078525 - 26078635
Alignment:
| Q |
24 |
tacattgctggtacatttgcagcatgtcaagcaatctggcttgacaatgtgatgaaggaactgaactgtgaagtaaagaaaccactgaagctgaagattg |
123 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||| ||||| ||||||||| |
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| T |
26078525 |
tacattgctggtacatttgcagcatgtcaagcaatttggcttgacaatgttatgaaggaactgaattgtgaagtaaagaaaccattgaagttgaagattg |
26078624 |
T |
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| Q |
124 |
acaacagatca |
134 |
Q |
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|||||||||| |
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| T |
26078625 |
gcaacagatca |
26078635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 1e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 24 - 134
Target Start/End: Complemental strand, 4958364 - 4958254
Alignment:
| Q |
24 |
tacattgctggtacatttgcagcatgtcaagcaatctggcttgacaatgtgatgaaggaactgaactgtgaagtaaagaaaccactgaagctgaagattg |
123 |
Q |
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||||||||||||||||||| || |||| ||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
4958364 |
tacattgctggtacatttgaagaatgttaagcaatctggctggacaatgtgatgaaggatctgaattgtgaagtaaagaaaccactgaagctgaagatta |
4958265 |
T |
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| Q |
124 |
acaacagatca |
134 |
Q |
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||||||||||| |
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| T |
4958264 |
acaacagatca |
4958254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 4e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 32368328 - 32368223
Alignment:
| Q |
24 |
tacattgctggtacatttgcagcatgtcaagcaatctggcttgacaatgtgatgaaggaactgaactgtgaagtaaagaaaccactgaagctgaagattg |
123 |
Q |
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|||||||| || ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
32368328 |
tacattgcaggcacatttgcagcatgtcaagcaatttggcttgacaatgtgataaaggaactcaactgtgaagtaaagaaaccactgaagctaaagattg |
32368229 |
T |
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| Q |
124 |
acaaca |
129 |
Q |
| |
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|||||| |
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| T |
32368228 |
acaaca |
32368223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 8124805 - 8124741
Alignment:
| Q |
70 |
atgtgatgaaggaactgaactgtgaagtaaagaaaccactgaagctgaagattgacaacagatca |
134 |
Q |
| |
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|||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
8124805 |
atgtgatgaaggaactcaactatgaagtgaagaaaccactgaagctgaagattgacaacaaatca |
8124741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 4e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 36 - 134
Target Start/End: Original strand, 5243416 - 5243514
Alignment:
| Q |
36 |
acatttgcagcatgtcaagcaatctggcttgacaatgtgatgaaggaactgaactgtgaagtaaagaaaccactgaagctgaagattgacaacagatca |
134 |
Q |
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| T |
5243416 |
acatttgcagcttgtcaagcaatctggcttgacaatgtgatgaaggaactcaactgtgaagtagagaagcccctaaaactgaagattgacaatagatca |
5243514 |
T |
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