View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5527-Insertion-4 (Length: 541)
Name: NF5527-Insertion-4
Description: NF5527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5527-Insertion-4 |
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| [»] chr2 (9 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 322 - 541
Target Start/End: Complemental strand, 2458157 - 2457938
Alignment:
| Q |
322 |
atgatgcacttagtatggcttttgaccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattattacatcttactttggcacat |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2458157 |
atgatgcacttagtatggcttttgaccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattattacatcttactttggcacat |
2458058 |
T |
|
| Q |
422 |
ccaatacgctttgtgtttctccaaacaacctgagtgtaatggccacacactttaccagaagcacatgtgttactattatagttatagtcgtttttctcat |
521 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2458057 |
ccaatacgctttgtgtttctccaaacaacctgagtgtaatggccacacactttaccagaagcacatgtgttactattatagttatagtcgtttttctcat |
2457958 |
T |
|
| Q |
522 |
tcacccacaacctcactgca |
541 |
Q |
| |
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|||||||||||||||||||| |
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| T |
2457957 |
tcacccacaacctcactgca |
2457938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 335 - 541
Target Start/End: Original strand, 3063274 - 3063483
Alignment:
| Q |
335 |
tatggcttttgaccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattatta---catcttactttggcacatccaatacgct |
431 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| |||| ||||||| ||||| |||||||||||||||| ||| | |
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| T |
3063274 |
tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt |
3063373 |
T |
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| Q |
432 |
ttgtgtttctccaaacaacctgagtgtaatggccacacactttaccagaagcacatgtgttactattatagttatagtcgtttttctcattcacccacaa |
531 |
Q |
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|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
3063374 |
gtgagtttctccaaacaacctgagtataatggccacacactttaccagaagcacatgtgttactattataattatagtcagctttctcattcacccacaa |
3063473 |
T |
|
| Q |
532 |
cctcactgca |
541 |
Q |
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| |||||||| |
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| T |
3063474 |
cttcactgca |
3063483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 328 - 541
Target Start/End: Complemental strand, 2462730 - 2462514
Alignment:
| Q |
328 |
cacttagtatggcttttgaccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattatta---catcttactttggcacatcca |
424 |
Q |
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||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| |||| ||||||| ||||| ||||||||||||||| |
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| T |
2462730 |
cacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatcca |
2462631 |
T |
|
| Q |
425 |
atacgctttgtgtttctccaaacaacctgagtgtaatggccacacactttaccagaagcacatgtgttactattatagttatagtcgtttttctcattca |
524 |
Q |
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| ||| | || |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||| |
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| T |
2462630 |
acacgttgtgagtttctccaaacaacctgggtataatggccacacactttaccagaagcacatgtgttactattataatcatagtcagctttctcattca |
2462531 |
T |
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| Q |
525 |
cccacaacctcactgca |
541 |
Q |
| |
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|||||||| |||||||| |
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| T |
2462530 |
cccacaacttcactgca |
2462514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 328 - 541
Target Start/End: Complemental strand, 2466775 - 2466562
Alignment:
| Q |
328 |
cacttagtatggcttttgaccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattatta---catcttactttggcacatcca |
424 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||| ||||||||||| |||||||||| |||| ||||||| ||||| ||||||||||||||| |
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| T |
2466775 |
cacttagtatggcttttcaccaa---agttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatcca |
2466679 |
T |
|
| Q |
425 |
atacgctttgtgtttctccaaacaacctgagtgtaatggccacacactttaccagaagcacatgtgttactattatagttatagtcgtttttctcattca |
524 |
Q |
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| ||| | || |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||| |
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| T |
2466678 |
acacgttgtgagtttctccaaacaacctgggtataatggccacacactttaccagaagcacatgtgttactattataatcatagtcagctttctcattca |
2466579 |
T |
|
| Q |
525 |
cccacaacctcactgca |
541 |
Q |
| |
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|||||||| |||||||| |
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| T |
2466578 |
cccacaacttcactgca |
2466562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 2458471 - 2458332
Alignment:
| Q |
8 |
gatggaatcccttagcaactaatcgtgttgtgtaacacaaagtggagccatcagaattcctctttagacaaaaataataaataccacaatttttaaaaca |
107 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | |
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| T |
2458471 |
gatggaatcccttagcaactaatcgtgttgtgtaatacaaagtggagccatcagaattcctctttagacaaaaaaaataaataccataatttttaaaata |
2458372 |
T |
|
| Q |
108 |
gatggcattaattagtttgaaagttatatgtgtgcgtcta |
147 |
Q |
| |
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|||| |||||||||||||| |||||||||||||| ||||| |
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| T |
2458371 |
gatgacattaattagtttggaagttatatgtgtgtgtcta |
2458332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 328 - 537
Target Start/End: Complemental strand, 2470100 - 2469891
Alignment:
| Q |
328 |
cacttagtatggcttttgaccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattattacatcttactttggcacatccaata |
427 |
Q |
| |
|
|||||||||||| ||| |||| ||||||||||||||| |||||||||||| |||||||||| ||||| ||||||||| | ||||||||||||||||| |
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| T |
2470100 |
cacttagtatggtctttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccgttattacatttcactttggcacatccaatc |
2470001 |
T |
|
| Q |
428 |
cgctttgtgtttctccaaacaacctgagtgtaatggccacacactttaccagaagcacatgtgttactattatagttatagtcgtttttctcattcaccc |
527 |
Q |
| |
|
|| | ||||||||||||||| ||||||||||| |||||||||| || |||| |||||||| |||||| |||| | ||||| | ||| |||| ||||| |
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| T |
2470000 |
cgttgtgtgtttctccaaaccacctgagtgtagtggccacacatttcaccattagcacatgaattactactataatcatagtagggtttttcatccaccc |
2469901 |
T |
|
| Q |
528 |
acaacctcac |
537 |
Q |
| |
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||||| |||| |
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| T |
2469900 |
acaacttcac |
2469891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 347 - 463
Target Start/End: Complemental strand, 2474352 - 2474236
Alignment:
| Q |
347 |
ccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattattacatcttactttggcacatccaatacgctttgtgtttctccaaa |
446 |
Q |
| |
|
|||| ||||||||| || || |||||||||||| |||||||||| |||||||||| |||| | |||||||||||||||||||| |||||||||||||||| |
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| T |
2474352 |
ccaatatagttgccaggggggtcgtaattgcaagtaatgaatgttcctccattatcacatttcactttggcacatccaatacgttttgtgtttctccaaa |
2474253 |
T |
|
| Q |
447 |
caacctgagtgtaatgg |
463 |
Q |
| |
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| |||||||| |||||| |
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|
| T |
2474252 |
ccacctgagtataatgg |
2474236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 2458269 - 2458214
Alignment:
| Q |
208 |
atttgagaagtatatatcatcatgatcgtaatgagtcgggaactcatttttcctgg |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2458269 |
atttgagaagtatatatcatcatgatcgtaatgagtcgggaactcatttttcctgg |
2458214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 362 - 425
Target Start/End: Complemental strand, 2471090 - 2471027
Alignment:
| Q |
362 |
ggtggatcgtaattgcaaataatgaatgtgcctccattattacatcttactttggcacatccaa |
425 |
Q |
| |
|
||||| || ||||||||| ||||||||||||||||||||| |||||| |||||| ||||||||| |
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| T |
2471090 |
ggtgggtcataattgcaagtaatgaatgtgcctccattatcacatctcactttgccacatccaa |
2471027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 6e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 335 - 541
Target Start/End: Complemental strand, 18016046 - 18015837
Alignment:
| Q |
335 |
tatggcttttgaccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattatta---catcttactttggcacatccaatacgct |
431 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| |||| ||||||| ||||| |||||||||||||||| ||| | |
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| T |
18016046 |
tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt |
18015947 |
T |
|
| Q |
432 |
ttgtgtttctccaaacaacctgagtgtaatggccacacactttaccagaagcacatgtgttactattatagttatagtcgtttttctcattcacccacaa |
531 |
Q |
| |
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|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
18015946 |
gtgagtttctccaaacaacctgagtataatggccacacactttaccagaagcacatgtgttactattataattatagtcagctttctcattcacccacaa |
18015847 |
T |
|
| Q |
532 |
cctcactgca |
541 |
Q |
| |
|
| |||||||| |
|
|
| T |
18015846 |
cttcactgca |
18015837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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