View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5527-Insertion-5 (Length: 329)
Name: NF5527-Insertion-5
Description: NF5527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5527-Insertion-5 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 5 - 327
Target Start/End: Complemental strand, 7964427 - 7964106
Alignment:
| Q |
5 |
acagatacctggataatatacaaggcagcatttattgaaatataaattatcttgagcatatcagttggtaaactccttgcctgctcagtcattcgaataa |
104 |
Q |
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| T |
7964427 |
acagatacctggattaaatatacggcaccatttacagagatgtaaattatcctgagcttatcagttggtaaactccttgcctgctcaatcatga-aataa |
7964329 |
T |
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| Q |
105 |
aattctgacctatttcatagtcaaactataaagtacttaataggctattaaggaaccactcctctggaaatgccgcattccaatagttggttcatttcat |
204 |
Q |
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| T |
7964328 |
aattataacctatttcctaataaaactagaaagtacttgataacaaattaaggaaccactcctctggaaatgccacattccaatagttggttcatttcat |
7964229 |
T |
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| Q |
205 |
tcactaatgcagaaataagtaagtttaagatagcaaaagaagacttgcctgatgataaatttcagcccaaaaaaggactagaagagtatatgttgagaaa |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||||| ||||| ||||||||||||||| |
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| T |
7964228 |
tcactaatgcagaaataagtaagtttaagatagcaaaagaagacatgcctggtgatagatttcagcccagaaaaggacaagaagtgtatatgttgagaaa |
7964129 |
T |
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| Q |
305 |
aagagtagtcctggaagatctaa |
327 |
Q |
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|| | || || ||||||||||| |
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| T |
7964128 |
aacacaagcccaggaagatctaa |
7964106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 55084872 - 55084771
Alignment:
| Q |
7 |
agatacctggataatatacaaggcagcatttattgaaatataaattatcttgagcatatcagttggtaaactccttgcctgctcagtcattcgaataaaa |
106 |
Q |
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| T |
55084872 |
agatacctggataatatacaaggcagcatttattgaaatataaattatcttgagcatatcagttggtaaactccttgcctgctcagtcattcgaataaaa |
55084773 |
T |
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| Q |
107 |
tt |
108 |
Q |
| |
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|| |
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| T |
55084772 |
tt |
55084771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 246 - 329
Target Start/End: Complemental strand, 55084456 - 55084373
Alignment:
| Q |
246 |
gacttgcctgatgataaatttcagcccaaaaaaggactagaagagtatatgttgagaaaaagagtagtcctggaagatctaata |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55084456 |
gacttgcctgatgataaatttcagcccaaaaaaggactagaagagtatatgttgagaaaaagagtagtcctggaagatctaata |
55084373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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