View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5527-Insertion-6 (Length: 321)
Name: NF5527-Insertion-6
Description: NF5527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5527-Insertion-6 |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 75 - 198
Target Start/End: Complemental strand, 41748593 - 41748470
Alignment:
| Q |
75 |
ctgattacaacttaatcctccctaccgttacaaaacttggctcatttcttcatcaaacaaaacagcaktaacaggatccgaaccaaacaaatccccaata |
174 |
Q |
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| T |
41748593 |
ctgattacaacttaatcctccctaccgttacaaaacttggctcatttcttcatcaaacaaaacagcagtaacaggatccgaaccaaacaaatccccaata |
41748494 |
T |
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| Q |
175 |
tcttggaaatcaccataatctctg |
198 |
Q |
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| T |
41748493 |
tcctggaaatcaccataatctctg |
41748470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 41748646 - 41748604
Alignment:
| Q |
1 |
aaattctctcattacaaattaaaatactatcatactactaatg |
43 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41748646 |
aaattctctcattacaaattaaaatactatcatactactaatg |
41748604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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