View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5527_high_15 (Length: 241)
Name: NF5527_high_15
Description: NF5527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5527_high_15 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 33 - 241
Target Start/End: Original strand, 27446480 - 27446688
Alignment:
| Q |
33 |
cgaatttctgtatacatcttatttttgcacaaaagattgtatatactaacagcaacctttttacatattctgttgtccaataaacgtgtaatttaacaat |
132 |
Q |
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| T |
27446480 |
cgaatttctgtatacatcttatttttgcacaaaagattgtatatactaacagcaacctttttacatattctgttgtccaataaacatgtaatttaacaat |
27446579 |
T |
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| Q |
133 |
ggcataggtcaaaagaaaacataattctcaccgaaggattactattagctagttcttttattggaagaagtaggagaacaattgcggttgtaaaattgca |
232 |
Q |
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| T |
27446580 |
ggcataggtcaaaagaaaacataattctcaccgaaggattactatttgctagttcttttattggaagaagtaggagaacaattgcggttgtaaaattgca |
27446679 |
T |
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| Q |
233 |
aaatgaaat |
241 |
Q |
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| T |
27446680 |
aaatgaaat |
27446688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 27439076 - 27439140
Alignment:
| Q |
39 |
tctgtatacatcttatttttgcacaaaagattgtatatactaacagcaacctttttacatattct |
103 |
Q |
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| T |
27439076 |
tctgtatacatcttatttttgcacaaaagattatatatagaaacagaaccctttttacaaattct |
27439140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 62
Target Start/End: Complemental strand, 27559050 - 27559022
Alignment:
| Q |
34 |
gaatttctgtatacatcttatttttgcac |
62 |
Q |
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| T |
27559050 |
gaatttctgtatacatcttatttttgcac |
27559022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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