View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5527_high_4 (Length: 507)
Name: NF5527_high_4
Description: NF5527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5527_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 153 - 491
Target Start/End: Original strand, 40233051 - 40233387
Alignment:
| Q |
153 |
tcctatccactaagttattaggtatgaatgtcatgattaatcgggcaataactgtattagattaggatattcattattgataaatttttctggaataaac |
252 |
Q |
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| T |
40233051 |
tcctatccactaagttattaggtatgaatgtcatgattaatcggtcaataactgtattagattaggatattcattattgataaatttttctggaataatc |
40233150 |
T |
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| Q |
253 |
tttcgatgattgtaatgagtctacagcttttgtagtaataacaatgaagcnnnnnnnagttaaactcttgctgtcatctgcccactcccagattttggta |
352 |
Q |
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| T |
40233151 |
tttcgatgattgtaatgagtctacagcttttgtagtaataacaatgaagctttttttagttaaactcttgctgtcatctgcccactcccagattttggta |
40233250 |
T |
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| Q |
353 |
ccattgacttgtctcactcaccttctgtcacgcttttttgtggttgtgcttatcttagttaacctcgacctaacctgcgaattagattgctatgatatag |
452 |
Q |
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| T |
40233251 |
ccattgacttgtctcactcaccttctgtcacgcttttttgtggttgtgcttatcttagttaacctcgacctaacctgcgaattagattgctatgattttg |
40233350 |
T |
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| Q |
453 |
agacttagagcttgtttctttccgtttctacatccttca |
491 |
Q |
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| T |
40233351 |
agactt--agtttgtttctttccgtttcaacatccttca |
40233387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 40232922 - 40233050
Alignment:
| Q |
1 |
ataaaattaatagattttaatcttgcattgtaacacataagactatagaacacatctttattaggttcatcgaatcacgttttacaaatttttagactaa |
100 |
Q |
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||||||||||||||||||||||||| |||| |||| || ||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||| || |
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| T |
40232922 |
ataaaattaatagattttaatcttgaattggaacaaattagaatatagaacacatctttattaggtccatcgaatcacgttttacaaataattagaccaa |
40233021 |
T |
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| Q |
101 |
ttttagttaaggttattttttaaacgcgt |
129 |
Q |
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| T |
40233022 |
ttttcctcaaggttgttttttaaacgcgt |
40233050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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