View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5527_high_7 (Length: 337)

Name: NF5527_high_7
Description: NF5527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5527_high_7
NF5527_high_7
[»] chr2 (7 HSPs)
chr2 (20-331)||(2350913-2351224)
chr2 (20-329)||(2303339-2303648)
chr2 (20-330)||(2326893-2327203)
chr2 (26-329)||(2330609-2330912)
chr2 (20-329)||(2321040-2321350)
chr2 (20-312)||(2293743-2294035)
chr2 (46-305)||(2310081-2310340)
[»] chr8 (3 HSPs)
chr8 (20-113)||(26506746-26506839)
chr8 (34-88)||(26494726-26494780)
chr8 (34-200)||(41127050-41127216)


Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 20 - 331
Target Start/End: Complemental strand, 2351224 - 2350913
Alignment:
Q  20 gatcccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtgtggtaacac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  2351224 gatcccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccgttaaaaagcacatcctctgtcaccgcgtgtggcaacac 2351125  T
Q  120 attatgccccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttccaccttctctcca 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2351124 attatgccccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttccaccttctctcca 2351025  T
Q  220 tttccatcatgacccatcacctccctaatctcgtccacaagcctcccttgcacgtcggggtacttcaccaaatttgccataatccattgcaaagccgtgg 319  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2351024 tttccatcacgacccatcacctccctaatctcgtccacaagcctcccttgcacgtcggggtacttcaccaaatttgccataatccattgcaaagccgtgg 2350925  T
Q  320 aagtattatcta 331  Q
    ||||| ||||||    
T  2350924 aagtagtatcta 2350913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 20 - 329
Target Start/End: Complemental strand, 2303648 - 2303339
Alignment:
Q  20 gatcccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtgtggtaacac 119  Q
    |||||||||||||||| |||| ||| ||||| ||||||||||||||||||||||||||||| || |||| |||||||||| ||||||||||||| ||||     
T  2303648 gatcccaccccatctccgccagcatgaaattcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctctttcaccgcgtgtggcaacag 2303549  T
Q  120 attatgccccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttccaccttctctcca 219  Q
    |  |||||||||||||||||||||||||||||||||||| |||||||||| ||||  |||||||||||| |||||||||||||||||| |||||||||||    
T  2303548 aaaatgccccggtggatgacgcctcaacccttccaaaacaacacatttcaaataccgaagtttctgcaattcttcctctttcacttcctccttctctcca 2303449  T
Q  220 tttccatcatgacccatcacctccctaatctcgtccacaagcctcccttgcacgtcggggtacttcaccaaatttgccataatccattgcaaagccgtgg 319  Q
    ||  |||||  |||||||||||||| |||||| |||||||||||||  ||||| || |||||||| |||||||| |||||||||||||||||||  ||||    
T  2303448 ttctcatcaccacccatcacctcccgaatctcctccacaagcctcctctgcacttctgggtacttaaccaaattcgccataatccattgcaaagtagtgg 2303349  T
Q  320 aagtattatc 329  Q
    ||||| ||||    
T  2303348 aagtagtatc 2303339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 2327203 - 2326893
Alignment:
Q  20 gatcccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtgtggtaacac 119  Q
    ||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||| |||||| ||  |||| || || || |||||    
T  2327203 gatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgctcactgcatgaggcaacac 2327104  T
Q  120 attatgccccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttccaccttctctcca 219  Q
    |  |||||| ||||||||||||||||||||||||||||||||||| |||| ||||  |||||| ||||| |||||||||||||||||| |||||||| ||    
T  2327103 aaaatgccctggtggatgacgcctcaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctctttcacttcctccttctctaca 2327004  T
Q  220 tttccatcatgacccatcacctccctaatctcgtccacaagcctcccttgcacgtcggggtacttcaccaaatttgccataatccattgcaaagccgtgg 319  Q
       ||||||  |||||| | |||||||||||| | ||||||||||| ||| ||||| ||||||||||||||||| ||||||||||| |||||||| ||||    
T  2327003 acaccatcaccacccatgaactccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaccaaattcgccataatccaatgcaaagcggtgg 2326904  T
Q  320 aagtattatct 330  Q
    ||||| |||||    
T  2326903 aagtagtatct 2326893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 26 - 329
Target Start/End: Complemental strand, 2330912 - 2330609
Alignment:
Q  26 accccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtgtggtaacacattatg 125  Q
    ||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| |||| |||||||||  |||| ||||| || |||||   |||    
T  2330912 accccatctctgcaaccataaaattcaccgtcccatctttaggcaccaaataaccattcaaaaccacatcctcgctcactgcgtgaggcaacacgaaatg 2330813  T
Q  126 ccccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttccaccttctctccatttcca 225  Q
    ||| |||||||||||||||||||||||||||||||| || |||| ||||  |||||| ||||| |||||||||||||||||| |||||||||||    ||    
T  2330812 ccctggtggatgacgcctcaacccttccaaaaccacgcacttcaaataccgaagtttatgcaagtcttcctctttcacttcctccttctctccagcatca 2330713  T
Q  226 tcatgacccatcacctccctaatctcgtccacaagcctcccttgcacgtcggggtacttcaccaaatttgccataatccattgcaaagccgtggaagtat 325  Q
    ||   ||||||||||||  ||||||| ||||||||| |||| || ||||| ||||||||||||||||| |||||||||||||||||||| |||||||||     
T  2330712 tcgccacccatcacctctgtaatctcctccacaagcttcccctgaacgtccgggtacttcaccaaattcgccataatccattgcaaagcggtggaagtag 2330613  T
Q  326 tatc 329  Q
    ||||    
T  2330612 tatc 2330609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 20 - 329
Target Start/End: Complemental strand, 2321350 - 2321040
Alignment:
Q  20 gatcccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtgtggtaacac 119  Q
    |||||||| ||||||| | || ||| ||||| ||||||||||||||||||||||||||||| || |||| |||||||||| |||||| |||||  |||||    
T  2321350 gatcccacgccatctccgacagcatgaaattcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctctttcaccgtgtgtgccaacac 2321251  T
Q  120 attatgcccc-ggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttccaccttctctcc 218  Q
    |  ||||||| |||||||||||||||| ||||||||||||||| || |||| |||   |||||||||||| | |||||||||||||||| ||||||||||    
T  2321250 aaaatgcccctggtggatgacgcctcatcccttccaaaaccacgcacttcaaatatcgaagtttctgcaagttttcctctttcacttcctccttctctcc 2321151  T
Q  219 atttccatcatgacccatcacctccctaatctcgtccacaagcctcccttgcacgtcggggtacttcaccaaatttgccataatccattgcaaagccgtg 318  Q
    |||  |||||  | |||||||||| | |||||| |||||||||||||| ||||| || ||||||||||||||||| ||||||||||| |||||||| |||    
T  2321150 attgtcatcactaaccatcacctcacgaatctcctccacaagcctcccctgcacttccgggtacttcaccaaattcgccataatccactgcaaagcagtg 2321051  T
Q  319 gaagtattatc 329  Q
    |||||| ||||    
T  2321050 gaagtagtatc 2321040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 2294035 - 2293743
Alignment:
Q  20 gatcccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtgtggtaacac 119  Q
    ||||| || ||||||| |||| ||  ||||| |||||||| |||||||||||||||||||| |  |||| |||||||||| ||||||||||||| |||      
T  2294035 gatccaacgccatctccgccagcaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctctttcaccgcgtgtggcaacgg 2293936  T
Q  120 attatgccccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttccaccttctctcca 219  Q
    |   | ||||||||||||||||||||||||||||||||||||||| |||| ||||  |||||||||||| |||||||||||||||||| |||||||||||    
T  2293935 aaatttccccggtggatgacgcctcaacccttccaaaaccacacacttcaaataccgaagtttctgcaagtcttcctctttcacttcctccttctctcca 2293836  T
Q  220 tttccatcatgacccatcacctccctaatctcgtccacaagcctcccttgcacgtcggggtacttcaccaaatttgccataatccattgcaaa 312  Q
    ||| |||||  |||||||||||||| |||||| |||||||||||||| ||||| || ||||||||||| | ||| ||||||||||| ||||||    
T  2293835 ttttcatcaccacccatcacctcccgaatctcctccacaagcctcccctgcacttctgggtacttcactacattcgccataatccactgcaaa 2293743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 46 - 305
Target Start/End: Complemental strand, 2310340 - 2310081
Alignment:
Q  46 aaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtgtggtaacacattatgccccggtggatgacgcctca 145  Q
    ||||| |||||||| |||||||||||||||||||| |  |||| |||||||||| ||||||||||||| |||  |   | ||||| ||||||||||||||    
T  2310340 aaattcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctctttcaccgcgtgtggcaacggaaatttccccgatggatgacgcctca 2310241  T
Q  146 acccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttccaccttctctccatttccatcatgacccatcacctccct 245  Q
    ||||||||||||||||||| |||| |||| ||||||||||||| |||||||||||||||||| |||||||||||||| |||||  ||||||||||||||     
T  2310240 acccttccaaaaccacacacttcaaataccaaagtttctgcaagtcttcctctttcacttcctccttctctccattttcatcaccacccatcacctcccg 2310141  T
Q  246 aatctcgtccacaagcctcccttgcacgtcggggtacttcaccaaatttgccataatcca 305  Q
    |||||| |||||||||||||| | ||| || ||||||||||||| ||| |||||||||||    
T  2310140 aatctcctccacaagcctccccttcacttctgggtacttcaccacattcgccataatcca 2310081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 26506839 - 26506746
Alignment:
Q  20 gatcccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtgtgg 113  Q
    |||||||||| | |||||||||||||||||| || |||||||||||||||||||| ||||| ||||||| ||||||||| ||||| || |||||    
T  26506839 gatcccacccaacctctgccaccataaaattaactgtcccatttttaggcaccaagtaaccgttaaaaatcacatcctcggtcactgcatgtgg 26506746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 26494780 - 26494726
Alignment:
Q  34 tctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaa 88  Q
    ||||||||||||||||| || |||||||||||||||||||| |||||||| ||||    
T  26494780 tctgccaccataaaattcacagtcccatttttaggcaccaagtaaccattcaaaa 26494726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 200
Target Start/End: Complemental strand, 41127216 - 41127050
Alignment:
Q  34 tctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtgtggtaacacattatgccccggtg 133  Q
    ||||||||||| ||||| ||   | |||||||||||| ||| ||||| |  |||| |||||||||  ||||||| || || ||||||   ||||||||||    
T  41127216 tctgccaccatgaaattcactaccacatttttaggcagcaagtaaccgtcgaaaaccacatcctccttcaccgcatggggcaacacaaagtgccccggtg 41127117  T
Q  134 gatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctcttt 200  Q
    | |||| ||||| ||||||||||| |||||| || |||||    || |||||||| |||||||||||    
T  41127116 ggtgacacctcagcccttccaaaatcacacactttagatatggtaggttctgcaagtcttcctcttt 41127050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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