View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5527_high_9 (Length: 308)
Name: NF5527_high_9
Description: NF5527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5527_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 8034733 - 8034445
Alignment:
| Q |
1 |
gaatgacttcaattagcaaacgaatcagcaaaattcagcagttgaactattgctgcacggaaaacctctaagaagtagagatcaaatgatacagatgtgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8034733 |
gaatgacttcaattagcaaacgaatcagcaaaattcagcagttgaactattgctgcacggaaaacctctaagaagtagagatcaaatgatacagatgtga |
8034634 |
T |
|
| Q |
101 |
agtctaagataacatcatcgtgcagttgatgctcactgggaaatagtattctaattaagaacgaccttggaagtttttatccatcttccaatcacataat |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8034633 |
agtctaagataacatcatcgtgcagttgatgctccctgggaaatagtattctaattaagaacgaccttggaagtttttatccatcttccaatcacataat |
8034534 |
T |
|
| Q |
201 |
cctaataatttatttatgaataagtcttccaaccattccttacagtaactgtcgtaaatcacatagcactctttctcaaatccagaatc |
289 |
Q |
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| T |
8034533 |
cctaataatttatttatgaataagtcttccaaccattccttacagtaactgtcgtaaatctcatagcactctttctcaaatccagaatc |
8034445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 8040100 - 8039914
Alignment:
| Q |
1 |
gaatgacttcaattagcaaacgaatcagcaaaattcagcagttgaactattgctgcacggaaaacctctaagaagtagagatcaaatgatacagatgtgg |
100 |
Q |
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||||| |||||||| |||||||||||||||||| |||||||||||| ||||| |||| ||||||| |||||||||||||||||||||||||||||| || |
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| T |
8040100 |
gaatggcttcaatttgcaaacgaatcagcaaaaatcagcagttgaattattgttgcatggaaaacatctaagaagtagagatcaaatgatacagatacgg |
8040001 |
T |
|
| Q |
101 |
agtctaagataacatcatcgtgcagttgatgctcactgggaaatagtattctaattaagaacgaccttggaagtttttatccatcttccaa |
191 |
Q |
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| T |
8040000 |
agtctaagataacctcatcgtacagttgacgctcaccgggaaatagtattc----taagagcgaccttggaagtttttatccatcttccaa |
8039914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 8039921 - 8039857
Alignment:
| Q |
225 |
tcttccaaccattccttacagtaactgtcgtaaatcacatagcactctttctcaaatccagaatc |
289 |
Q |
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|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
8039921 |
tcttccaaccattccttacagtaactgttgtaaatctcatagcactctttctcaaatccagaatc |
8039857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 204 - 289
Target Start/End: Complemental strand, 31402241 - 31402156
Alignment:
| Q |
204 |
aataatttatttatgaataagtcttccaaccattccttacagtaactgtcgtaaatcacatagcactctttctcaaatccagaatc |
289 |
Q |
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|
|||||||||||||| || |||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
31402241 |
aataatttatttattaacaagtcttccaaccattccttacggtaactgttgtaaatctcatagcactctttctcaaatccagaatc |
31402156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 7 - 203
Target Start/End: Complemental strand, 31402457 - 31402265
Alignment:
| Q |
7 |
cttcaattagcaaacgaatcagcaaaattcagcagttgaactattgctgcacggaaaacctctaagaagtagagatcaaatgatacagatgtggagtcta |
106 |
Q |
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|||| ||| ||||||||||||||||||||||| ||||||| ||| ||| || | |||| ||| |||| ||| ||||| ||||| |||| || | ||| |
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| T |
31402457 |
cttcgatttgcaaacgaatcagcaaaattcagaagttgaattatcgctccatgacaaacatctgagaaatagtgatcagatgattcagagttgaattctg |
31402358 |
T |
|
| Q |
107 |
agataacatcatcgtgcagttgatgctcactgggaaatagtattctaattaagaacgaccttggaagtttttatccatcttccaatcacataatcct |
203 |
Q |
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||| ||| |||| | |||||| | |||||||||||||||||||||| || | ||||||||||||||||||||||||||||||| ||||||| |
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| T |
31402357 |
agaagacaccatcatatagttgacgttcactgggaaatagtattctaa----gagcaaccttggaagtttttatccatcttccaatcatgtaatcct |
31402265 |
T |
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