View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5527_low_1 (Length: 613)

Name: NF5527_low_1
Description: NF5527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5527_low_1
NF5527_low_1
[»] chr8 (4 HSPs)
chr8 (19-476)||(35594108-35594565)
chr8 (19-218)||(35568201-35568400)
chr8 (19-218)||(35582932-35583131)
chr8 (494-557)||(34615500-34615563)
[»] chr4 (6 HSPs)
chr4 (492-588)||(6842243-6842339)
chr4 (491-584)||(52462349-52462442)
chr4 (492-528)||(46854312-46854348)
chr4 (494-588)||(29322215-29322310)
chr4 (494-548)||(16491292-16491346)
chr4 (536-588)||(46854340-46854391)
[»] scaffold0373 (1 HSPs)
scaffold0373 (492-588)||(3861-3957)
[»] chr2 (1 HSPs)
chr2 (492-588)||(6149523-6149619)
[»] chr3 (1 HSPs)
chr3 (494-588)||(46224714-46224808)
[»] chr1 (2 HSPs)
chr1 (494-588)||(22667885-22667979)
chr1 (81-138)||(26859934-26859991)
[»] chr6 (1 HSPs)
chr6 (494-557)||(34376867-34376930)


Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 19 - 476
Target Start/End: Original strand, 35594108 - 35594565
Alignment:
Q  19 catcatccacttcaaggttactactactagactctgttaatggagaaggtgataaggcggtgaaaagcttgaattttgaagcgttcccacgaattaatgg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  35594108 catcatccacttcaaggttactactactagactctgttaatggagaaggtgataaggcagtgaaaagcttgaattttgaagcgttcccacgaattaatgg 35594207  T
Q  119 aagtgttgaatgcacttgtgagttgaagaacatatannnnnnnaatgggatttgtggttcaagtgctattggtatgtgaagtgaactaacagaaaaagct 218  Q
    |||||||||||||||||||||||||||||||||| |       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35594208 aagtgttgaatgcacttgtgagttgaagaacatagatttttttaatgggatttgtggttcaagtgctattggtatgtgaagtgaactaacagaaaaagct 35594307  T
Q  219 tccattgttccctttctgcagagtaatggaacaagagaagaaagtggaaacacttcaatgttagatgatttagctcagagataatgaaactagaggctca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35594308 tccattgttccctttctgcagagtaatggaacaagagaagaaagtggaaacacttcaatgttagatgatttagcttagagataatgaaactagaggctca 35594407  T
Q  319 ggnnnnnnngttattatgcaaggtatgaaatgaaacatgaggctcaattttatcaactacagtgcgaacgaaaagtccacgtgttgtcagttttgtgtac 418  Q
    ||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35594408 ggtttttttgttattatgcaaggtatgaaatgaaacatgaggctcaattttatcaactacagtgcgaacgaaaagtccacgtgttgtcagttttgtgtac 35594507  T
Q  419 acatcaaccatgggatttggcttgcatttataaaatcgctcaagcttactttttataa 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35594508 acatcaaccatgggatttggcttgcatttataaaatcgctcaagcttactttttataa 35594565  T

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Target: chr8; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 35568201 - 35568400
Alignment:
Q  19 catcatccacttcaaggttactactactagactctgttaatggagaaggtgataaggcggtgaaaagcttgaattttgaagcgttcccacgaattaatgg 118  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  35568201 catcatccacttcaaggttactactactagactctgttaacggagaaggtgataaggcagtgaaaagcttgaattttgaagtgttcccacgaattaatgg 35568300  T
Q  119 aagtgttgaatgcacttgtgagttgaagaacatatannnnnnnaatgggatttgtggttcaagtgctattggtatgtgaagtgaactaacagaaaaagct 218  Q
    |||||||||||| | |||||| || ||||||||  |       |||||| |||||| || | |||||||||| ||||||||||||| || ||||||||||    
T  35568301 aagtgttgaatggatttgtgacttcaagaacatggatttttttaatggggtttgtgttttatgtgctattgggatgtgaagtgaacaaagagaaaaagct 35568400  T

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Target: chr8; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 35582932 - 35583131
Alignment:
Q  19 catcatccacttcaaggttactactactagactctgttaatggagaaggtgataaggcggtgaaaagcttgaattttgaagcgttcccacgaattaatgg 118  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  35582932 catcatccacttcaaggttactactactagactctgttaacggagaaggtgataaggcagtgaaaagcttgaattttgaagtgttcccacgaattaatgg 35583031  T
Q  119 aagtgttgaatgcacttgtgagttgaagaacatatannnnnnnaatgggatttgtggttcaagtgctattggtatgtgaagtgaactaacagaaaaagct 218  Q
    |||||||||||| | |||||| || ||||||||  |       |||||| |||||| || | |||||||||| ||||||||||||| || ||||||||||    
T  35583032 aagtgttgaatggatttgtgacttcaagaacatggatttttttaatggggtttgtgttttatgtgctattgggatgtgaagtgaacgaagagaaaaagct 35583131  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 494 - 557
Target Start/End: Original strand, 34615500 - 34615563
Alignment:
Q  494 tgtttggttccaaggaaagaaagaggagtggaatggaaagaaagtggaatgatgctctttccac 557  Q
    |||||||||||||||||||||||| | |||||||||||||| ||||||||||||| ||||||||    
T  34615500 tgtttggttccaaggaaagaaagatgggtggaatggaaagagagtggaatgatgccctttccac 34615563  T

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Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 492 - 588
Target Start/End: Original strand, 6842243 - 6842339
Alignment:
Q  492 tatgtttggttccaaggaaagaaagaggagtggaatggaaagaaagtggaatgatgctctttccactatttaacacaccttcataaagctaaggaaa 588  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  6842243 tatgtttggttccaaggaaagaaagaggagtggaatggaaagagagtggaatgatgctctttccactgtttgacacaccttcataaagctaaggaaa 6842339  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 491 - 584
Target Start/End: Complemental strand, 52462442 - 52462349
Alignment:
Q  491 atatgtttggttccaaggaaagaaagaggagtggaatggaaagaaagtggaatgatgctctttccactatttaacacaccttcataaagctaag 584  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||   |||||||||||||||||||    
T  52462442 atatgtttggttccaacgaaagaaagaggagtggaatggaaagagagtggaatgatgctctttctactgtttggtacaccttcataaagctaag 52462349  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 492 - 528
Target Start/End: Original strand, 46854312 - 46854348
Alignment:
Q  492 tatgtttggttccaaggaaagaaagaggagtggaatg 528  Q
    |||||||||||||||||||||||||||||||||||||    
T  46854312 tatgtttggttccaaggaaagaaagaggagtggaatg 46854348  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 494 - 588
Target Start/End: Original strand, 29322215 - 29322310
Alignment:
Q  494 tgtttggttccaaggaaagaaagaggagtggaatggaaagaaagtggaatgatgctctttccactatttaacacaccttca-taaagctaaggaaa 588  Q
    |||||| ||||| ||||||||||  |||||||  ||||||| ||||||||||||  |||||||   ||| |||||||||||  |||||||||||||    
T  29322215 tgtttgattccatggaaagaaaggtgagtggatgggaaagagagtggaatgatgtcctttccatagtttgacacaccttcacaaaagctaaggaaa 29322310  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 494 - 548
Target Start/End: Original strand, 16491292 - 16491346
Alignment:
Q  494 tgtttggttccaaggaaagaaagaggagtggaatggaaagaaagtggaatgatgc 548  Q
    |||||||||||| ||||||||||| ||| || ||| ||||| |||||||||||||    
T  16491292 tgtttggttccatggaaagaaagatgagggggatgaaaagagagtggaatgatgc 16491346  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 588
Target Start/End: Original strand, 46854340 - 46854391
Alignment:
Q  536 agtggaatgatgctctttccactatttaacacaccttcataaagctaaggaaa 588  Q
    ||||||||||||||||||| ||| |||  ||||||||||| ||||||||||||    
T  46854340 agtggaatgatgctctttctactgtttggcacaccttcat-aagctaaggaaa 46854391  T

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Target: scaffold0373 (Bit Score: 81; Significance: 8e-38; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 492 - 588
Target Start/End: Complemental strand, 3957 - 3861
Alignment:
Q  492 tatgtttggttccaaggaaagaaagaggagtggaatggaaagaaagtggaatgatgctctttccactatttaacacaccttcataaagctaaggaaa 588  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||||||||    
T  3957 tatgtttggttccaaggaaagaaagaggagtggaatggaaagagagtggaatgatgctctttccactgtttgacacaccttcataaagttaaggaaa 3861  T

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Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 492 - 588
Target Start/End: Original strand, 6149523 - 6149619
Alignment:
Q  492 tatgtttggttccaaggaaagaaagaggagtggaatggaaagaaagtggaatgatgctctttccactatttaacacaccttcataaagctaaggaaa 588  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||| |||  ||||||||||||||| ||||||||    
T  6149523 tatgtttggttccaaggaaagaaagaggagtggaatggaaagagagtggaatgatattctttccactgtttggcacaccttcataaagttaaggaaa 6149619  T

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Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 494 - 588
Target Start/End: Complemental strand, 46224808 - 46224714
Alignment:
Q  494 tgtttggttccaaggaaagaaagaggagtggaatggaaagaaagtggaatgatgctctttccactatttaacacaccttcataaagctaaggaaa 588  Q
    |||||||||||||||||||||||| | |||||||| ||||| ||||||||||||| ||||||||  |||   ||||||||| |||||||||||||    
T  46224808 tgtttggttccaaggaaagaaagatgggtggaatgaaaagagagtggaatgatgccctttccaccgtttggaacaccttcacaaagctaaggaaa 46224714  T

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Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 494 - 588
Target Start/End: Original strand, 22667885 - 22667979
Alignment:
Q  494 tgtttggttccaaggaaagaaagaggagtggaatggaaagaaagtggaatgatgctctttccactatttaacacaccttcataaagctaaggaaa 588  Q
    |||||||||||||||||||||||| |  ||||||||||||| ||||||||||||| ||||||||  |||   ||||||||| ||||||| |||||    
T  22667885 tgtttggttccaaggaaagaaagatggatggaatggaaagagagtggaatgatgccctttccaccgtttggaacaccttcacaaagctatggaaa 22667979  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 26859991 - 26859934
Alignment:
Q  81 aaaagcttgaattttgaagcgttcccacgaattaatggaagtgttgaatgcacttgtg 138  Q
    |||||||| |||||||||| ||||||||||||||||||| ||| |||||||| |||||    
T  26859991 aaaagcttaaattttgaagtgttcccacgaattaatggatgtgatgaatgcaattgtg 26859934  T

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Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 494 - 557
Target Start/End: Original strand, 34376867 - 34376930
Alignment:
Q  494 tgtttggttccaaggaaagaaagaggagtggaatggaaagaaagtggaatgatgctctttccac 557  Q
    |||||||||||||||||||||||| |  ||||||||||||| ||||||||||||| ||||||||    
T  34376867 tgtttggttccaaggaaagaaagatggatggaatggaaagagagtggaatgatgccctttccac 34376930  T

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