View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5527_low_13 (Length: 260)
Name: NF5527_low_13
Description: NF5527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5527_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 7131013 - 7130911
Alignment:
| Q |
1 |
aaccaaaatattttcaacccaagatcttagagggggcttttggatagccacaagaaaacactaatgatatatgggacaagatgacacatgggattacaaa |
100 |
Q |
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| T |
7131013 |
aaccaaaatattttcaacccaagatcttagagggggcttttggatagccacaagaaaacactaatgttatatgggacaagatgacacatgggattacaaa |
7130914 |
T |
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| Q |
101 |
agt |
103 |
Q |
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||| |
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| T |
7130913 |
agt |
7130911 |
T |
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Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 105 - 213
Target Start/End: Original strand, 17083889 - 17083998
Alignment:
| Q |
105 |
gtggcgtttaatttggactcaccgaaaaattggtccaacttgaacccattaactt-aaaccattgatcaaataagatgtatagattttatgacagtcctt |
203 |
Q |
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|||||||||||||||||| || ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | |||||| | ||||| | |
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| T |
17083889 |
gtggcgtttaatttggacccattgaaaaattggtccaacttggacccattaacttaaaaccattgatcaaataagatgtacatattttacggtagtccat |
17083988 |
T |
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| Q |
204 |
ccacacatga |
213 |
Q |
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|||||||||| |
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| T |
17083989 |
ccacacatga |
17083998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 110 - 194
Target Start/End: Original strand, 38701069 - 38701152
Alignment:
| Q |
110 |
gtttaatttggactcaccgaaaaattggtccaacttgaacccattaacttaaaccattgatcaaataagatgtatagattttatg |
194 |
Q |
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| T |
38701069 |
gtttaatttggac-cattgaaaaattggtctaacttgaaccaattaacttaaaccattgatcaaataggatgtatagattttatg |
38701152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 110 - 242
Target Start/End: Original strand, 54385236 - 54385367
Alignment:
| Q |
110 |
gtttaatttggactcaccgaaaaattggtccaacttgaacccattaacttaaaccattgatcaaataagatgtatagattttatgacagtccttccacac |
209 |
Q |
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||||||||||||| || ||||||||| ||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||| ||||| || ||| |
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| T |
54385236 |
gtttaatttggacccattgaaaaattgatccaacttggaccaattaacttagaccattgatcaaataagatgtatagattttatagtagtccatctgcac |
54385335 |
T |
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| Q |
210 |
atgattaaactctctcactcttccagcatctct |
242 |
Q |
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|||| | ||||||||||||||||| |||||| |
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| T |
54385336 |
atgagt-tgctctctcactcttccagtatctct |
54385367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 9257321 - 9257408
Alignment:
| Q |
15 |
caacccaagatcttagagggggcttttggatagccacaagaaaacactaatgatatatgggacaagatgacacatgggattacaaaagt |
103 |
Q |
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|||| |||||||||| |||||| |||| |||| ||||| | || |||||||||||| |||||||||||| |||||| ||||| |||||| |
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| T |
9257321 |
caacacaagatcttataggggg-ttttagataaccacatggaagcactaatgatatgtgggacaagatggcacatgagattaaaaaagt |
9257408 |
T |
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