View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5527_low_3 (Length: 556)
Name: NF5527_low_3
Description: NF5527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5527_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 20 - 539
Target Start/End: Complemental strand, 32269346 - 32268820
Alignment:
| Q |
20 |
ttaggtacctataatttttcaaagaaaaccttggtctcacctatc------attaataattttgaggaagccagcctaaaatagtgtgagactttaattc |
113 |
Q |
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| T |
32269346 |
ttaggtacctataatttttcaaagaaaaccttggtctcacctatccctatcattaataattttgaggaagccagcctaaaatagtgtgagactttaattc |
32269247 |
T |
|
| Q |
114 |
aggccaacaatgtgcaattttt-gttagcattgaaataggatctcactggaatagagaaaacaactaacattagagtgtaaannnnnnnnnnnnnnnnna |
212 |
Q |
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| T |
32269246 |
aggccaacaatgtgcaattttttgttagcattgaaataggatctcactggtatagagaaaacaactaacattagagtgtaaaattttttatttttttt-a |
32269148 |
T |
|
| Q |
213 |
gggaagtgtaaaataaatattattattaattaacaaatcaatgtgaatattatttgaaaatcataacaaattatgagtttctttttaaatgattaccatt |
312 |
Q |
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| T |
32269147 |
gggaagtgtaaaataaatattattattaattaacaaatcaatgtgaatattatttgaaaatcataacaaattatgagtttttttttaaatgactaccatt |
32269048 |
T |
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| Q |
313 |
gattacactttacgcactttaaataagacaaattttcttatacttattcgagtctagacatccaacttatttactttaaaaatgaatttttagtcatatt |
412 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32269047 |
gattacactttacccactttaaataagacaaattttcttatacttattcgagttcaaacatccaacttatttactttaaaaatgaatttttagtcatatt |
32268948 |
T |
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| Q |
413 |
tgacnnnnnnngagacatttttaaaatggaggtggaatctaaaaaatct-acccaatacaaatgagttaatttgacactaatcctatgattagtttaagg |
511 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32268947 |
tgacaaaaaaagagacatttttaaaatggaggtggaatctaaaaaaactaacccaatacaaatgagttaatttgacactaatcctatgattagtttaagg |
32268848 |
T |
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| Q |
512 |
tgatattgcttgctatttctcctgattc |
539 |
Q |
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| T |
32268847 |
tgatattgcttgctatttctcctgattc |
32268820 |
T |
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