View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5527_low_6 (Length: 431)
Name: NF5527_low_6
Description: NF5527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5527_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Original strand, 29652546 - 29652952
Alignment:
| Q |
18 |
attctgaagataaaatattttcaaacaattttataagtatttatgtccgttgataaattcaaataagttaattcaatcacatttaatgttcacattgcta |
117 |
Q |
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| T |
29652546 |
attctaaagataaaatatttttaaacagttttacaagtatttatgtccgccgataaattcaaataagtcaattcaatcacatttaatgttcacattgcta |
29652645 |
T |
|
| Q |
118 |
aattaaagaagataaagttgattaattaccatttatagagaatgtggatgagacagattcttcctccttggaatagtgagaagagttccctttacctttc |
217 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29652646 |
aattaaagaagataaagttgattaattaccattaatagagaatgtggatgagacagattcttcctccttggaatagtgagaagagttccctttacctttc |
29652745 |
T |
|
| Q |
218 |
ttctccatgaatgcagatttgagctcaataagaatatccatttgttttttcaaggactcccctctatcaagaaactctttctcctttgtcctatagaatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29652746 |
ttctccatgaatgcagatttgagctcaataagaatatccatttgttttttcaaggactcccctctatcaagaaactctttctcctttgtcctatagaatt |
29652845 |
T |
|
| Q |
318 |
tattaaccttattgaggttttggtctaaacatgcaaaaaattcttttgtagcatcagtgtcagcaaattggtctagcagttgtgtctcatacatgtcacc |
417 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29652846 |
tatttaccttattgaggttttggtccaaacatgcaaaaaattcttttgtagcatcagtgtcagcaaattggtctagcagttgtgtctcatacatgtcacc |
29652945 |
T |
|
| Q |
418 |
tttgcta |
424 |
Q |
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||||||| |
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| T |
29652946 |
tttgcta |
29652952 |
T |
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