View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5527_low_7 (Length: 380)
Name: NF5527_low_7
Description: NF5527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5527_low_7 |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 370
Target Start/End: Complemental strand, 33701560 - 33701205
Alignment:
| Q |
19 |
cactagaaacatgaggaggatgaagaagtacactctggattttggtctgaacagtcccacatcaatagtgcttaaacaacaataagaagatttacttata |
118 |
Q |
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| T |
33701560 |
cactagaaacatgagcaggacgaagaagtatactctggattttggtctgaacagtcccacatcaatagtgcttaaacaacgataagaagatttacttata |
33701461 |
T |
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| Q |
119 |
aaacacccttatgctgcaactgtttagacccaaaaatgaaatgtatattatgcgatctccacttagtttataaaagtggttatggtatgtaataactttt |
218 |
Q |
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||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33701460 |
aaagacccttgtgctgcaactgtttagacccaaaaatgaaatgtatattatgctatctccacttagtttataaaagtggttatagtatgtaataactttt |
33701361 |
T |
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| Q |
219 |
ggtgcattggttctcgaaagtatccgacatttggaaaaactaaattttaaattttcatatgttggtatttttgaagatcaatctactaaaac----ggag |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33701360 |
ggtgcattggttctcgaaagtatccgacatttggaaaaactaaattttaaattttcatatgttggtatttttgaagatcaatctactaaaataaatggag |
33701261 |
T |
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| Q |
315 |
tttctaaatttattttttcttttgttgaatagaaaggaaaatgtttgatatacatc |
370 |
Q |
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| T |
33701260 |
tttctaaatttattttttcttttgttgaatagaaaggaaaatgtttgatatacatc |
33701205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 21311200 - 21311092
Alignment:
| Q |
49 |
cactctggattttggtctgaacagtcccacatcaatagtgcttaaacaacaat-aagaagatttacttataaaacacccttatgctgcaactgtttagac |
147 |
Q |
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| T |
21311200 |
cactctagattttggtttgaacagtcccatattgatggtacttaaccaacaaagaagaagacttacttataaaaggcccttgtgctctaacagtttagac |
21311101 |
T |
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| Q |
148 |
ccaaaaatg |
156 |
Q |
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| T |
21311100 |
ccaataatg |
21311092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 12672 - 12590
Alignment:
| Q |
52 |
tctggattttggtctgaacagtcccacatcaatagtgcttaaacaa-caataagaagatttacttataaaacacccttatgct |
133 |
Q |
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|||||||||| | |||| |||||||||| || |||||||||||| ||| | |||||||||||||||||| |||||| |||| |
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| T |
12672 |
tctggatttttatttgaatagtcccacatggatggtgcttaaacaatcaagaggaagatttacttataaaagacccttgtgct |
12590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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