View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5527_low_9 (Length: 331)
Name: NF5527_low_9
Description: NF5527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5527_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 4 - 311
Target Start/End: Complemental strand, 39481052 - 39480744
Alignment:
| Q |
4 |
gtgaaattcaattttttctaggattgggatccaaaggtgctgccatgtaaacacaacaaaaa-tcatcatnnnnnnncagtcaagtggatatagatagag |
102 |
Q |
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| T |
39481052 |
gtgaaattcaattttttctaggattgggatccaaaggtgctgccatgtaaacacaacaaaaaatcatcataaaaaaacagtcaagtggatatagatagag |
39480953 |
T |
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| Q |
103 |
tatgtttaannnnnnnaccatggagaatagataattacctgtccagcaatggtatttgagcaaagcctagacattgttgtgagccattgcttgatgaacg |
202 |
Q |
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| T |
39480952 |
tatgtttaatttttttaccatggagaatagataattacctgtccagcaatggtatttgagcaaagcctagacattgttgtgagccattgcttgatgaacg |
39480853 |
T |
|
| Q |
203 |
tgagatgagagttgggggtaggacaaaggatgctcagtagagtagtatatatatagggagaggacatgacagatgagaagatgaatggtgcattggaatt |
302 |
Q |
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| T |
39480852 |
tgagatgagagttgggggtaggacaaaggatgctcagtagagtagtatatatatagggagaggacatgacagatgagaagatgaatggtgcattggaatt |
39480753 |
T |
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| Q |
303 |
acgcactta |
311 |
Q |
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||||||||| |
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| T |
39480752 |
acgcactta |
39480744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 9e-64; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 120 - 307
Target Start/End: Original strand, 6308785 - 6308972
Alignment:
| Q |
120 |
ccatggagaatagataattacctgtccagcaatggtatttgagcaaagcctagacattgttgtgagccattgcttgatgaacgtgagatgagagttgggg |
219 |
Q |
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| T |
6308785 |
ccatggagaatcaacatttacctgtcaaacaatggtattatagcaaagcgtagacattgttgtgagtcattgcttgatgaacgtgagataagagttgcgg |
6308884 |
T |
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| Q |
220 |
gtaggacaaaggatgctcagtagagtagtatatatatagggagaggacatgacagatgagaagatgaatggtgcattggaattacgca |
307 |
Q |
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| T |
6308885 |
gtaggacaaaggaggctcagtagagtagtatatatatagggagaggacatgatatatgagaagatgtatggtgcattggaattacgca |
6308972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 120 - 307
Target Start/End: Original strand, 6301975 - 6302162
Alignment:
| Q |
120 |
ccatggagaatagataattacctgtccagcaatggtatttgagcaaagcctagacattgttgtgagccattgcttgatgaacgtgagatgagagttgggg |
219 |
Q |
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| T |
6301975 |
ccatggagaatcaacatttacctgtcaaacaatggtattatagcaaagtgtagacattgttgtgagtcatttcttgatgaacgtgagataagagttgcgg |
6302074 |
T |
|
| Q |
220 |
gtaggacaaaggatgctcagtagagtagtatatatatagggagaggacatgacagatgagaagatgaatggtgcattggaattacgca |
307 |
Q |
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| T |
6302075 |
gtaggacaaaggaggctcagtagagtagtatatatatagggagaggacatgatatatgagaagatgtatggtgcattggaattacgca |
6302162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 6301905 - 6301945
Alignment:
| Q |
25 |
gattgggatccaaaggtgctgccatgtaaacacaacaaaaa |
65 |
Q |
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| T |
6301905 |
gattgggatccaaaggtgctgccacgtaaacacaacaaaaa |
6301945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 6308715 - 6308755
Alignment:
| Q |
25 |
gattgggatccaaaggtgctgccatgtaaacacaacaaaaa |
65 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |
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| T |
6308715 |
gattgggatccaaaggtgctgccacgtaaacacaacaaaaa |
6308755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 120 - 307
Target Start/End: Complemental strand, 2440540 - 2440353
Alignment:
| Q |
120 |
ccatggagaatagataattacctgtccagcaatggtatttgagcaaagcctagacattgttgtgagccattgcttgatgaacgtgagatgagagttgggg |
219 |
Q |
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| T |
2440540 |
ccatggagaatcaacatttacctgtcaaacaatggtattagagcaaagggtagacattgttgtgagtcatttcttgatgaacgtgagataagagttgcgg |
2440441 |
T |
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| Q |
220 |
gtaggacaaaggatgctcagtagagtagtatatatatagggagaggacatgacagatgagaagatgaatggtgcattggaattacgca |
307 |
Q |
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| T |
2440440 |
gtaggacaaaggaggctcagtagagtagtatatatatagggagaggacatgatatatgagaagatgtatggtgcattggaattacgca |
2440353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 2440610 - 2440570
Alignment:
| Q |
25 |
gattgggatccaaaggtgctgccatgtaaacacaacaaaaa |
65 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |
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| T |
2440610 |
gattgggatccaaaggtgctgccacgtaaacacaacaaaaa |
2440570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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