View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5528-Insertion-1 (Length: 478)

Name: NF5528-Insertion-1
Description: NF5528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5528-Insertion-1
NF5528-Insertion-1
[»] chr1 (1 HSPs)
chr1 (8-478)||(46618294-46618754)


Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 8 - 478
Target Start/End: Complemental strand, 46618754 - 46618294
Alignment:
Q  8 aaaagatcagaacattatcacaacagacatgaacattatgctacctacagagactcttacctaaaggaatcattggatgcaccatggacttcaatgacta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46618754 aaaagatcagaacattatcacaacagacatgaacattatgctacctacagagactcttacctaaaggaatcattggatgcaccatggacttcaatgacta 46618655  T
Q  108 ctaccttagatgaaactgctttcaaagccaaacaacgcctacagaagaaacttggtcacttcttttcctcttccaggtacatccactcctacagaataat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  46618654 ctaccttagatgaaactgctttcaaagccaaacaacgcctacagaagaaacttggtcacttcttttcctcttcaaggtacatccactcctacagaataat 46618555  T
Q  208 acnnnnnnnnnnnnnnnnnnnnnnaagaaacaagaaacctgttactcttaatttttagtctaactagctagaatttatacaaattgtctaggcttttatt 307  Q
    ||                      |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46618554 ac----------ttttttttttttaagaaacaagaaacctgttagtcttaatttttagtctaactagctagaatttatacaaattgtctaggcttttatt 46618465  T
Q  308 taattttccacatgtttcttatgtacactcacatgcatagtaaggaatttaacttcnnnnnnnnctctctaaagtgaaggatatcaaggaagattcacat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |         ||||||||||||||||||||||||||||||||||||    
T  46618464 taattttccacatgtttcttatgtacactcacatgcatagtaaggaatttaaccttttttttctctctctaaagtgaaggatatcaaggaagattcacat 46618365  T
Q  408 gatttaattgtgttttgatttaatattgtttctataaccatttatgatgagttatgaggtcattctgcata 478  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46618364 gatttaattgtgttttgatttaatattgtttctataaccatttatgatgagttatgaggtcattctgcata 46618294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University