View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5528-Insertion-4 (Length: 192)
Name: NF5528-Insertion-4
Description: NF5528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5528-Insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 126; Significance: 3e-65; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 7834263 - 7834122
Alignment:
| Q |
7 |
aaaacggaggccatagcaacgatgtttggtttgcaacgcaccaaaaaggaacaatgtgggaagaatgttggaaaaaagaagcagcttaaagtccagaacc |
106 |
Q |
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| T |
7834263 |
aaaacggaggccatagcaacgatgtttggtttgcaacgcaccaaaaaagaacaatgtgggaagaatgttggaaaaaagaagcagcttaaagtccagaaca |
7834164 |
T |
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| Q |
107 |
gagtttttaagtatatagtaaatcaaagtataacaataatta |
148 |
Q |
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| T |
7834163 |
aagtttttaagtatatagtaaaccaaagtataacaataatta |
7834122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 7784802 - 7784657
Alignment:
| Q |
7 |
aaaacggaggccatagcaacgatgtttggtttgcaacgcaccaaaaaggaacaatgtgggaagaatgttggaaaaaagaagcagc---ttaa-agtccag |
102 |
Q |
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| T |
7784802 |
aaaacggaggccatagcaacgatgtttggtttgcaacgcaccaaaaaggaacaatgtgggaagaatgttggaaaaaagaagcagctaattaacagtccag |
7784703 |
T |
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| Q |
103 |
aaccgagtttttaagtatatagtaaatcaaagtataacaataatta |
148 |
Q |
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| T |
7784702 |
aaccgagtttttaagtatatagtaaaccaaagtataacaataatta |
7784657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 7804867 - 7804722
Alignment:
| Q |
7 |
aaaacggaggccatagcaacgatgtttggtttgcaacgcaccaaaaaggaacaatgtgggaagaatgttggaaaaaagaagcagc---ttaa-agtccag |
102 |
Q |
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| T |
7804867 |
aaaacggaggccatagcaacgatgtttggtttgcaacgcaccaaaaaggaacaatgtgggaagaatgttggaaaaaagaagcagctaattaacagtccag |
7804768 |
T |
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| Q |
103 |
aaccgagtttttaagtatatagtaaatcaaagtataacaataatta |
148 |
Q |
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| T |
7804767 |
aaccgagtttttaagtatatagtaaaccaaagtataacaataatta |
7804722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 165 - 192
Target Start/End: Complemental strand, 7784642 - 7784615
Alignment:
| Q |
165 |
ggtcaggaaacaatagttattttgccat |
192 |
Q |
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| T |
7784642 |
ggtcaggaaacaatagttattttgccat |
7784615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 165 - 192
Target Start/End: Complemental strand, 7804707 - 7804680
Alignment:
| Q |
165 |
ggtcaggaaacaatagttattttgccat |
192 |
Q |
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| T |
7804707 |
ggtcaggaaacaatagttattttgccat |
7804680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 165 - 192
Target Start/End: Complemental strand, 7834105 - 7834078
Alignment:
| Q |
165 |
ggtcaggaaacaatagttattttgccat |
192 |
Q |
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| T |
7834105 |
ggtcaggaaacaatagttattttgccat |
7834078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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