View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5529-Insertion-2 (Length: 1055)
Name: NF5529-Insertion-2
Description: NF5529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5529-Insertion-2 |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 544; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 366 - 1055
Target Start/End: Complemental strand, 2768948 - 2768253
Alignment:
| Q |
366 |
gcagaatcaggaaatgggttggcgagtgaagagnnnnnnntcttacttgaacggtacggttatgatgttgatgctgatgactactttcctcaatcttctt |
465 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2768948 |
gcagaatcaggaaatgggttggcgagtgaagagaaaaaaatcttacttgaacggtatggttatgatgttgatgctgatgactactttcctcaatcttctt |
2768849 |
T |
|
| Q |
466 |
ctccaaaggnnnnnnnnnnnnnnn--cctctttgtgtttttatatgattgtaaatttctgtaatactgtaaattacaacttttataagggttgtttgaat |
563 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2768848 |
ctccaaaggtttttcattttttttttcctctttgtgtttttatatgattgtaaatttctgtaatactgtaaattacaacttttataagggttgtttgaat |
2768749 |
T |
|
| Q |
564 |
tgcttttctgcttaacttttcaatttgaataagtttatgtt-gttgatttatgaaaaaagtgcttatatgatttaagttgagataaagttattgaaaaat |
662 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2768748 |
tgcttttctgcttaatttttcaatttgaataagtttatgttagttgatttatgaaaaaagtgcttatatgatttaagttgagataaagttattgaaaaat |
2768649 |
T |
|
| Q |
663 |
ttgagatgcagtggcttattttgatttattcaacaagatgttatttaaaaataatgtatatgtaaagatttcttacactgtcataaaatcacacatgatt |
762 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2768648 |
ttgagatgcagtggcttattttgatttatacaacaagatgttatttaaaaatagtgtatatgtaaagatttcttacactgttataaaatcacacatgatt |
2768549 |
T |
|
| Q |
763 |
ggttgcgatttgctgactttttgtttcgtgaattttgtcgtgttttgcaactatttagtcgaagaggaagaaggagcaacaaaagacaagaggagggaaa |
862 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2768548 |
ggttgcgatttgctgactttttgtttcgtgaattttgtcgtgttttgcaactatttagtcgaagaggaagaaggagcaacaaaagacaagaggagggaaa |
2768449 |
T |
|
| Q |
863 |
caagtgcaggatccacccgaggaacctaagcctcctcgtacgacacataaattacttcaggtaatctcattttaacacttggaagtgctaattgatgagg |
962 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2768448 |
caagtgcaggatccacctgtggaacctaagcctcctcgtacgacacataaattacttcaggtaatctcattttaacacttggaagtgctaattgatgagg |
2768349 |
T |
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| Q |
963 |
aaaataaaaactggttatcttcgttaactgatg-taacgtctttcttcagtttatcgtatgcttttt-acacccg-tgcatc-aagcattataacct |
1055 |
Q |
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|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||| |
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| T |
2768348 |
aaaataaaaact-gttatcttcgttaactgatgttaacgtctttcttcagtttatcgtatgctttttaacacccgttgcatcaaagcattataacct |
2768253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 87 - 273
Target Start/End: Complemental strand, 2769227 - 2769041
Alignment:
| Q |
87 |
agtaagttcatcatctcccatctcagtaacactgacacttctgattaaaagcatgttcggtgtcccacacttgttagtgtgcgacacagacacatataat |
186 |
Q |
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| T |
2769227 |
agtaagttcatcatctcccatctcagtaacactgacacttctaattaaaagcatgttcggtgtcccacacttgttagtgtgcgacacagacacatataat |
2769128 |
T |
|
| Q |
187 |
tacattcaattatgttattttatcgaataattaccggtatcgacatgttacttgtatatgtcaatgcttcacagttcatcattgctg |
273 |
Q |
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| T |
2769127 |
tacattcaattatgttattttatcgaataattaccggtatcgacatgttacttgtatatgtcaatgcttcacagttcatcattgctg |
2769041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 9617493 - 9617436
Alignment:
| Q |
168 |
cgacacagacacatataattacattcaattatgttattttatcgaataattaccggta |
225 |
Q |
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|||||| |||||||||||||||||| |||||||| ||||| || ||| |||||||||| |
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| T |
9617493 |
cgacaccgacacatataattacattgaattatgtgattttctcaaattattaccggta |
9617436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 19040416 - 19040355
Alignment:
| Q |
163 |
gtgtgcgacacagacacatataattacattcaattatgttattttatcgaataattaccggt |
224 |
Q |
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|||| ||||||||||||||||||||||| | |||||||| ||||| || ||| |||| |||| |
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| T |
19040416 |
gtgtccgacacagacacatataattacactgaattatgtgattttctcaaattattagcggt |
19040355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 7328691 - 7328759
Alignment:
| Q |
168 |
cgacacagacacatataattacattcaattatgttattttatcgaataattaccggtatcgacatgtta |
236 |
Q |
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|||||| |||||||||||||||| | |||||||||||||| || ||| |||| | |||||||| ||||| |
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| T |
7328691 |
cgacaccgacacatataattacactaaattatgttattttctcaaattattagcagtatcgacgtgtta |
7328759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 99944 - 99886
Alignment:
| Q |
176 |
acacatataattacattcaattatgttattttatcgaataattaccggtatcgacatgt |
234 |
Q |
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||||||||||||||||| |||||||||||||| | ||| |||| |||| ||||||||| |
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| T |
99944 |
acacatataattacattgaattatgttattttctaaaattattatcggtgtcgacatgt |
99886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 38749571 - 38749629
Alignment:
| Q |
176 |
acacatataattacattcaattatgttattttatcgaataattaccggtatcgacatgt |
234 |
Q |
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| T |
38749571 |
acacatataattacattgaattatgtcattttttcaaattattatcggtgtcgacatgt |
38749629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 207
Target Start/End: Original strand, 48202270 - 48202308
Alignment:
| Q |
169 |
gacacagacacatataattacattcaattatgttatttt |
207 |
Q |
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|||||||||||||||||||||||| |||||||| ||||| |
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| T |
48202270 |
gacacagacacatataattacattaaattatgtgatttt |
48202308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 13844590 - 13844635
Alignment:
| Q |
162 |
agtgtgcgacacagacacatataattacattcaattatgttatttt |
207 |
Q |
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| T |
13844590 |
agtgtccgacaccgacacatataattacactcaattatgtgatttt |
13844635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 48433208 - 48433241
Alignment:
| Q |
174 |
agacacatataattacattcaattatgttatttt |
207 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
48433208 |
agacacatgtaattacattcaattatgttatttt |
48433241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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