View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5529-Insertion-4 (Length: 495)
Name: NF5529-Insertion-4
Description: NF5529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5529-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 174 - 479
Target Start/End: Original strand, 32604865 - 32605170
Alignment:
| Q |
174 |
aaactataggtttatgtgaattgtgagtttgtgggtgaccatcaaaatgcaaaataggctttatataggccaaaaaagctaattatttaaaaaagagaag |
273 |
Q |
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| T |
32604865 |
aaactatatgtttatgtgaattgtgagtttgtgggtgaccatcaaaatgcaaaataggctttatataggccaaaaaagctaattatttaaaaaagagaag |
32604964 |
T |
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| Q |
274 |
ccccagtttcacacaccaccggcacttaattaatggcactaactctctcacctcaatttttcatcttagagattcccttatccattttccaaaacgagcc |
373 |
Q |
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| T |
32604965 |
ccccagtttcacacaacaccggcacttaattaatggcactaactctctcacctcaatttttcaccttagagattcccttatccattttccaaaacaagcc |
32605064 |
T |
|
| Q |
374 |
catattccgatcaattactagaatctgattttatgtttattatggaatcaatgttttttcctacacaatattgattcaccatgttttgaaagtctaaccc |
473 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32605065 |
catattccgatcaattactagaatctgattttatgtttattatggaatcaatgttttttcctacacaatattgattcaccatgttttgaaagtctaaccc |
32605164 |
T |
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| Q |
474 |
cttccg |
479 |
Q |
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|||||| |
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| T |
32605165 |
cttccg |
32605170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 32604714 - 32604853
Alignment:
| Q |
7 |
acatccccgagtaaccaaattgaagggataatatagcaagatatggtttaatctttcgaagcagtgctcctttgttcaacttaccattagcattttggtc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32604714 |
acatccccgagtaaccaaattgaagggataatatagcaagatatggtttaatctttcgaagcagtgctcctttgttcaacttaccattagcattttggtc |
32604813 |
T |
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| Q |
107 |
ctccattgatctcttttgagctatgaaagtaccgtgcttg |
146 |
Q |
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| T |
32604814 |
ctccattgatctcttttgagctatgaaagtaccgtgcttg |
32604853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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